Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01320 ATGGCTGCCTCTCGACGCCTTCGAGATCTGCAATCGCAATCAGGCAACAAGATCTGCGTCGATTGCTCACAGAAAAACCCTCAATGGGCTTCGGTCTCGTACGGTATCTTCATGTGCCTTGAATGCTCGGGCAAGCACCGCGGCCTTGGCGTTCACATAAGCTTCGTCAGATCGGTCACCATGGACTCATGGTCCGAGATCCAGCTCAAGAAGATGGAGGCCGGAGGCAACGAGCAGTTCAACGCCTTTCTTTCGCAGTACGAGGTTCCTAAAGAGACCGACATCGTCGCCAAGTACAATACAAATGCTGCCAGCATTTACAGAGAGAGAATTCAAGCTCTTGCCGAAGGTCGCCCGTGGCGGGAACCTCCGGTTGTCAAGGAAACAGTGGGGATCGGGAAGAAGAAGCCGCCATTGGGGAACAGCGCAGGTGGTGGCGGTGGCAGGGACGGTAATCTGGGGAGTAACGGAGGTTGGGATAGTTGGGATAATGATGATGGTTTTCGGTCTTCAGATATGAGGCGGAATCAGTCAACGGGGGATTTTAGAGGTGGAAGCGGTAGTGGTGGGAGGGGGGTGCCCGTGAGATCGAGGTCGACAGAGGATATGTACACAAGGTCGCAGATGGAGGCCTCAGCTGCGAATAAAGAGAGCTTTTTTGCAAGGAAGATGTCGGAGAATGAATTTCGGCCCGAAGGGATCCCACCTTCGCAAGGAGGAAAGTATGTGGGGTTTGGATCGACGCCTCTGCCAGCTCAACAGAACAGTTCCCAAGGGGATGTTCTCAGAGACACGGTGTCTGTTGTTTCTCAGGGATTAGGTAGACTATCTCTGGTTGCAACATCTGCTGCTCAGTCTGCGGCTAACGTAGTCCAAGTTGGCACAAAAGAGCTCACTTCCAAGGTGAGAGAGGGTGGCTACGATTACAAGGTGAATGACACAGTGACTGTCGTAACCACAAAAACTACTGAGATTGGGCAGAAGACATGGGGAATAATGAAAGGGGTCATGGCGATGGCTTCGCAGAAGGTTGAGGAGTACACCAAGGAAGGGATCAACTGGAAGGGAGATAGCTGGCAAAGAAATGACAGTGAGAGGAATGGTAATTATCAGGAATTTGGGCAGGAGAGCAAAGGGTGGAACTCTTCTTCTGGAGGAGGAAACTCTTCATCAGGTAGACAGTTCAACTCTGTCAATTCTTCAAGCTCTTGGGACGACTGGGACAGTAAAGACAATCACAAGGAAGAACACGGGAAAGGAACGGCATCCCAGAATGGAGATAGCTGGGCAGGGTGGGAGGATGCCAAAGACGATGGTTATGAGAATTTCTATCACAATGCGTCCAATAAGAGTGCACCTGGTCAGAATGGGAAATCAGATGCGCTGTGGACAGAGGGTGGCTTCCTGTAA 1410 0.5149 MAASRRLRDLQSQSGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQLKKMEAGGNEQFNAFLSQYEVPKETDIVAKYNTNAASIYRERIQALAEGRPWREPPVVKETVGIGKKKPPLGNSAGGGGGRDGNLGSNGGWDSWDNDDGFRSSDMRRNQSTGDFRGGSGSGGRGVPVRSRSTEDMYTRSQMEASAANKESFFARKMSENEFRPEGIPPSQGGKYVGFGSTPLPAQQNSSQGDVLRDTVSVVSQGLGRLSLVATSAAQSAANVVQVGTKELTSKVREGGYDYKVNDTVTVVTTKTTEIGQKTWGIMKGVMAMASQKVEEYTKEGINWKGDSWQRNDSERNGNYQEFGQESKGWNSSSGGGNSSSGRQFNSVNSSSSWDDWDSKDNHKEEHGKGTASQNGDSWAGWEDAKDDGYENFYHNASNKSAPGQNGKSDALWTEGGFL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01320 469 SUPERFAMILY ArfGap/RecO-like zinc finger 5 109 IPR037278 -
Eupl05g01320 469 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Eupl05g01320 469 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 468 IPR044519 GO:0005096|GO:0016192
Eupl05g01320 469 MobiDBLite consensus disorder prediction 406 421 - -
Eupl05g01320 469 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Eupl05g01320 469 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Eupl05g01320 469 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Eupl05g01320 469 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Eupl05g01320 469 MobiDBLite consensus disorder prediction 355 469 - -
Eupl05g01320 469 MobiDBLite consensus disorder prediction 355 405 - -
Eupl05g01320 469 MobiDBLite consensus disorder prediction 444 458 - -
Eupl05g01320 469 MobiDBLite consensus disorder prediction 128 206 - -
Eupl05g01320 469 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Eupl05g01320 469 CDD ArfGap_ArfGap1 3 117 - -
Eupl05g01320 469 Pfam Putative GTPase activating protein for Arf 5 97 IPR001164 GO:0005096
Eupl05g01320 469 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01320 Eupl-Chr5 35971454 35986925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01320 5 91 C2H2 Transcription Factor Family AT4G21160 47.727 2.52e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01320 K12492 - nnu:104594590 705.286