Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01317 ATGTCCAGTGCGTTGGACATGTCTCTCGACGATCTGATCAAGACCAACAAGAAATCTGGAGGAGGAGGCAGAGGTAGAGGAAGAAGTTCAGGTCCTGGTCCCGCTCGTCGGTTGTCGAGTCGCGGCGCGAATCGAACCACACCTTATTCGACGGGAAAGCCGGTTCAGGCACCCGATTCAGCGTGGCAGCACGATATGTTCACAGATCAGGTGGCCGCTTATCCGGCACAGGGAGCTCGAGCCTCTGCGATAGAAACGGGCACCAAGCTCTACATTTCCAACTTAGATTATGGCGTTTCGAACGAGGACATCAAGGAACTCTTTTCAGAGGTTGGTGACCTGAAACGATATTCAATCCATTATGATAGGAGTGGAAGATCAAAGGGAACGGCAGAAGTGGTCTTTTCAAGGCGAGCAGATGGTGTAGCAGCAGTCAAGAGATACAACAATGTTCAGCTTGATGGGAAGCCAATGAAAATAGAGATTGTAGGAACAAATATTGTGACTCCTGCTGCTGTGCCTCCGGCTACGAATGGCATATTTGGAAATCCTAATGGTGTCCCAAGAAGTGGACAAGGAAGGGGTGGAGCTATGGCACGGCCTCGAGGTGGGGGTGGCGGCAGCAGTGGCGGCCGTGGTTCTGGGAGGGGCCATGGACGGGGCAGAGGCCGTGGTGAACAGGTATCTGCAGATGATCTCGATGCAGAATTGGAGAAGTACCACTCAGAAGCAATGCAAATAAATTGA 747 0.5194 MSSALDMSLDDLIKTNKKSGGGGRGRGRSSGPGPARRLSSRGANRTTPYSTGKPVQAPDSAWQHDMFTDQVAAYPAQGARASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRADGVAAVKRYNNVQLDGKPMKIEIVGTNIVTPAAVPPATNGIFGNPNGVPRSGQGRGGAMARPRGGGGGSSGGRGSGRGHGRGRGRGEQVSADDLDAELEKYHSEAMQIN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01317 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Eupl05g01317 248 MobiDBLite consensus disorder prediction 219 241 - -
Eupl05g01317 248 MobiDBLite consensus disorder prediction 1 59 - -
Eupl05g01317 248 FunFam THO complex subunit 4 81 231 - -
Eupl05g01317 248 MobiDBLite consensus disorder prediction 179 248 - -
Eupl05g01317 248 Gene3D - 69 231 IPR012677 -
Eupl05g01317 248 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 246 - -
Eupl05g01317 248 CDD RRM_THOC4 88 162 - -
Eupl05g01317 248 Pfam C-terminal duplication domain of Friend of PRMT1 188 243 IPR025715 -
Eupl05g01317 248 SMART FoP_duplication_2 177 248 IPR025715 -
Eupl05g01317 248 MobiDBLite consensus disorder prediction 40 57 - -
Eupl05g01317 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Eupl05g01317 248 SUPERFAMILY RNA-binding domain, RBD 70 194 IPR035979 GO:0003676
Eupl05g01317 248 SMART rrm1_1 89 161 IPR000504 GO:0003723
Eupl05g01317 248 Coils Coil 230 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01317 Eupl-Chr5 35903513 35914054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01317 87 205 Eukaryotic Initiation Factors Gene Family AT1G71770 27.778 3.21e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01317 K12881 - nnu:104599317 350.517