Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01315 ATGGTTATACCGAACGATGACGTGGTGTTAATCCAGAAAGGGAATACGCCGGGAGAGCCCTACGTTATCACCGTGAATTGTCCAGACAAGACCGGACTCGGATGCGATATTTGCAGAATTATCCTCGATTTTGGACTCTACATTACTAGAGGAGATGTTTCAACTGACGGGAAATGGTGCTACGTGGTACTGTGGGTTGTTCCTTATTCTGGTTCGATTAAGGTGAGATGGGCAAGTTTGAAAGATCGACTGCTATCCGTATGTCCATCGTGTTCGCTTTCATACTACTTCTATCAGCAGTCTAGTCGATCCACGCCTTCGCAACTTTACTTATTGAAGTTCTTTTGTCTCGATCAGAAGGGATTGTTACATGATGTTACAAAAGTCCTTTGTGAGCTCGAGTTTACGATCCAGAGAGTGAAAGTTATGACGACCCCCGATGGCAGAGTCATGGACCTATTCTTTATTACAGATAACATGGAGCTTTTACACACAAAAAAGAGACGGGATGACACGTGTGAAAGACTGAATGCCGTTTTGGGAGATTCATGTATCAGCTGCGAGCTTCAATTGACAGGGCCTGAATTTGAAACTCTTCAACAGGGGGTCTCTACTCTTTCAGCAGAAGTTGCCAAGGAATTGTTTTGTTGTGAGTTATCGGACAATGAAAACCGTTCGCAAGCTCTTAGTCCAGATTTGACAAAGCTAAAGAAGGCCAGTGTTACGATAGACAATTCCTTGAGCCCAGCTCACACTTTGCTTCAACTACACTGTGTTGATCAAAAGGGCCTCCTCTACGACATTATGAGAACTCTGAAGGACTGCAGTATTCAGATAGCTTATGGACGATTCTCATCAAATACCAAAAATTACCTGGATGTCGATCTATTTATCCAGCAAAAAGATGGTAAAAAGATTGTGGATCCTGAGAAGCAGAGTGCTCTGTGTTCTCGTCTAAAGTTTGAGATGCTCCATCCATTGCGAGTGATAATTATCAACCGTGGGCCAGACACTGAACTCGTGGTTGCTAATCCCGTAGAGTTTTCTGGAAAGGGAAGACCCCGTGTCTTCTACGATGTTACCATTGCTCTAAAGGTGCTTGGCATCTGCATTTTCTCGGTAAGAAATCTGATGTTTGGATCGCCTCATCATTTTTGTAGGCTTGTTATATTATCGGAAAGGGAATTAACAACTATCCATTGTGTTGCTTTGAAGGCTGAAATTGGGAGGCATATGACATCAGATCGCCAATGGGAAGTCTACAGGTTCCTTTTGGATGAAAGCTGTGAATTTCCATTGGCAAACAGTCAAGCTAGAAATCAGATTGTAGACAGAGGAGAAGGAGCTTTTGGTGGTTTTGGGTTGGTGATTTCCGGAGCTGGTGGTGGTTTTAGATCTGTGGTTTCTGAGGGATTGGTTTGGGTGGTTGTTCCAATGAGTCCAGATAGCAGCAGGAGCCCTCCACGAGCCAGGCGGTTTCGTGGTAGTGACCGCTCGGCATACCGTGATGCGCCATATAGAAGGGAGAGTCGTAGTTACAGACAAGACTATCTGTGCAAGAACTGCAAGCGACCTGGACATTATGCCAGAGATTGTCCAAATGTGGCTGTTTGCAACAACTGTGGACTTCCTGGGCACATTGCTTCTGAGTGCAATGCAAAAACTATGTGCTGGAACTGCAAGGAGCCAGGGCACGTTGCAAGCCAGTGCAACAATGATCCCATCTGCCATGTGTGCGGCAAAGTGGGCCACCTGGCTCGTGAGTGCTCGGGCTCAGGCCTGCCCCTCTATGACCCAAGGCTCTGTAACAACTGTTACAAGCCAGGCCACATTGCCGTTGACTGCACCAATGAAAAGGCATGCAACAACTGCCGCAAGACTGGCCACCTGGCCCGTGAATGCCCCAATGAGCCTGTCTGCAATGTCTGCAACGTCTCAGGTCATGTGGCACGCCAGTGCCCTAAATCAAGCCTGGCATCGGAGATAGCTGGTGGTCCCTTTCGTGATATCATCTGTCGCAATTGCAGCCAGCCAGGGCACATTAGCCGTGACTGTGTATCCATCGTCATCTGCAACAACTGTGGTGGGCGGGGGCACCATGCATTCGAGTGCCCCTCAGGACGGGTGCTTGACCGTGGCCTTCGCAGGCTGAGCATCAAAATTTGTTTGCCTGTTTTGAGGTGGTGA 2187 0.4746 MVIPNDDVVLIQKGNTPGEPYVITVNCPDKTGLGCDICRIILDFGLYITRGDVSTDGKWCYVVLWVVPYSGSIKVRWASLKDRLLSVCPSCSLSYYFYQQSSRSTPSQLYLLKFFCLDQKGLLHDVTKVLCELEFTIQRVKVMTTPDGRVMDLFFITDNMELLHTKKRRDDTCERLNAVLGDSCISCELQLTGPEFETLQQGVSTLSAEVAKELFCCELSDNENRSQALSPDLTKLKKASVTIDNSLSPAHTLLQLHCVDQKGLLYDIMRTLKDCSIQIAYGRFSSNTKNYLDVDLFIQQKDGKKIVDPEKQSALCSRLKFEMLHPLRVIIINRGPDTELVVANPVEFSGKGRPRVFYDVTIALKVLGICIFSVRNLMFGSPHHFCRLVILSERELTTIHCVALKAEIGRHMTSDRQWEVYRFLLDESCEFPLANSQARNQIVDRGEGAFGGFGLVISGAGGGFRSVVSEGLVWVVVPMSPDSSRSPPRARRFRGSDRSAYRDAPYRRESRSYRQDYLCKNCKRPGHYARDCPNVAVCNNCGLPGHIASECNAKTMCWNCKEPGHVASQCNNDPICHVCGKVGHLARECSGSGLPLYDPRLCNNCYKPGHIAVDCTNEKACNNCRKTGHLARECPNEPVCNVCNVSGHVARQCPKSSLASEIAGGPFRDIICRNCSQPGHISRDCVSIVICNNCGGRGHHAFECPSGRVLDRGLRRLSIKICLPVLRW* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01315 728 Pfam Zinc knuckle 519 534 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 557 571 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 537 551 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 671 685 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 639 655 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 601 617 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 620 636 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 575 590 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Pfam Zinc knuckle 690 706 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SUPERFAMILY ACT-like 18 97 IPR045865 -
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 621 636 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 519 534 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 PANTHER - 479 712 - -
Eupl05g01315 728 Gene3D - 663 709 - -
Eupl05g01315 728 Gene3D - 573 619 - -
Eupl05g01315 728 SUPERFAMILY Retrovirus zinc finger-like domains 664 707 IPR036875 GO:0003676|GO:0008270
Eupl05g01315 728 SUPERFAMILY Retrovirus zinc finger-like domains 555 592 IPR036875 GO:0003676|GO:0008270
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 672 685 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 Gene3D - 620 662 - -
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 576 589 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 537 553 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 690 706 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 601 617 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 575 591 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 671 687 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 518 534 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 556 572 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 639 655 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SMART c2hcfinal6 620 636 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SUPERFAMILY ACT-like 107 182 IPR045865 -
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 691 706 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 538 551 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 ProSiteProfiles ACT domain profile. 111 194 IPR002912 -
Eupl05g01315 728 CDD ACT_ACR-like_2 110 185 - -
Eupl05g01315 728 Gene3D - 512 536 - -
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 640 655 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SUPERFAMILY Retrovirus zinc finger-like domains 510 554 IPR036875 GO:0003676|GO:0008270
Eupl05g01315 728 Gene3D - 537 572 - -
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 557 570 IPR001878 GO:0003676|GO:0008270
Eupl05g01315 728 SUPERFAMILY Retrovirus zinc finger-like domains 598 638 IPR036875 GO:0003676|GO:0008270
Eupl05g01315 728 ProSiteProfiles Zinc finger CCHC-type profile. 602 617 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01315 Eupl-Chr5 35870657 35890867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01315 484 639 C2H2 Transcription Factor Family AT5G20220 25.281 3.36e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01315 - - nnu:104594585 672.159