Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01307 ATGGCGATCAGAGCAGGGTTATTGAGGCGATTCCTCTCGACTTCGGTGTTCTCTTCGCAATTTACAGCTGCTCCTGTTGCTACTGCTGCCTCTGCTAATCCTGCTCCAGTTCCTTCAACGTCTCTTTTCGTCTCAGGGCTCAACAAGAGAACTACGTCAGAGAAGCTTCAAGAAGCTTTCTCTAAATTTGGAGAAGTTGTTCATGCTAAGGTAGTAACAGACCGAGCTTCAGGTTATTCAAAAGGGTATGGGTTCGTGAGATACAGCACGTTAGAAGAGGCAGAACAGGGCATAAAGGGTATGGATGGACAGTTTCTTGATGGTTGGGTCATTTTTGCTGAATACGCGCGGCCAAGAGCTCCCCCAGAACAGTCACCACCACCAGAATCATACCAACAGTCTCGCTGGTGA 411 0.4818 MAIRAGLLRRFLSTSVFSSQFTAAPVATAASANPAPVPSTSLFVSGLNKRTTSEKLQEAFSKFGEVVHAKVVTDRASGYSKGYGFVRYSTLEEAEQGIKGMDGQFLDGWVIFAEYARPRAPPEQSPPPESYQQSRW* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01307 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Eupl05g01307 136 FunFam RNA recognition motif-containing protein 19 130 - -
Eupl05g01307 136 SMART rrm1_1 41 114 IPR000504 GO:0003723
Eupl05g01307 136 PANTHER NUCLEOLAR PROTEIN 8 28 130 - -
Eupl05g01307 136 Gene3D - 18 126 IPR012677 -
Eupl05g01307 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 108 IPR000504 GO:0003723
Eupl05g01307 136 SUPERFAMILY RNA-binding domain, RBD 25 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01307 Eupl-Chr5 35760928 35766085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01307 41 117 Eukaryotic Initiation Factors Gene Family AT2G23350 37.662 1.70e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01307 - - msin:131243651 182.185