Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01292 ATGGAGGAAGGAAAACCAAATCAACTCACTTTACCCCGGGTCCTTCTCCTCGTAATCGGGATTGCGTCAGCAGCCATCATCGTAACGGTCTACCACTGCATCGCTGCTTGTTGGTTCAACCGACGACGGAGCCAACCAGATCCACAAGTGTCGACTCAGCCCGAACAAGTAGAAGAAACTCCGAGCGGATTAGATAATTCCATGGTACAGCTTATTCCGGCATACCGCTATGATAAGGAGGTGGGATTTATTGGTGAAGATGGCACGTGTGCGGTGTGTTTGTGCGAGTTTGAGGAAGGAGAGGAGGTACGTACTTTGCCCGAGTGCATGCACTCCTTCCACGTGCTTTGTATCGATATGTGGCTCCACTCCCATACAAATTGCCCACTCTGCCGCAGTGTTGCCACGCCGTCGCCACAGCTTCTACTGGATTCCAGTATGTCGCTGCCATTGCATGATTTGAGCATGTTGCGGGATTTTGGTGGTCAAGCTCGATCACTATGA 504 0.5119 MEEGKPNQLTLPRVLLLVIGIASAAIIVTVYHCIAACWFNRRRSQPDPQVSTQPEQVEETPSGLDNSMVQLIPAYRYDKEVGFIGEDGTCAVCLCEFEEGEEVRTLPECMHSFHVLCIDMWLHSHTNCPLCRSVATPSPQLLLDSSMSLPLHDLSMLRDFGGQARSL* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01292 167 SUPERFAMILY RING/U-box 84 139 - -
Eupl05g01292 167 CDD RING-H2_EL5-like 90 132 - -
Eupl05g01292 167 SMART ring_2 90 131 IPR001841 -
Eupl05g01292 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 137 IPR013083 -
Eupl05g01292 167 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Eupl05g01292 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 135 IPR044675 -
Eupl05g01292 167 Pfam Ring finger domain 89 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01292 Eupl-Chr5 35599097 35599645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01292 16 136 C3H Transcription Factor Family AT5G17600 36.364 6.42e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01292 - - qsa:O6P43_009347 166.392