Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01289 ATGGACACTAGTGCAGCAAAGAAGAAAAGAGTCTCGCGAATCGTAGGAGGGGGACTTCGCCAGTTGAGTATCATAGTGTGTAAGAAGGTTGAGAGCAAGGGAAGAACCACATACAGTGAGGTTGCAGATGAAATCATAACAGAATCTGCAGCAATGCAAAATAATAAAGTGTCTCTGGATGAGCAGTTTGACGAGAAGAACATACGACGACGGGTGTATGATGCCTTAAATGTTCTCATGTCGATGAATATTATCACTAAAAACAAAAAGGAAATCCAGTGGAAGGGTCTTCCCAGTATGAACATAAAGGATAGGGAAGAGCTAGAGGCACTGCGTGTTAAGCTGACGAGTAGGATTGGAAAGAAAGCGGCTTATTTACAAGAGTTAGAAGAACAAATTACAGGTCTCCAGAGCCTCATGCTGTGCAATCAGCGATTGAACAAATCAGGAAATGTCCCTTCTGAAGGGTTTTCATTGCCATTTATACTGATTCAAACGCGCGCACATGCTACAGTTGAGATTGAGATCTCTGAAGACATGCGGTTGGTGCACTTTGATTTCAACAGCACACCCTTTTCTTTGCATGACGATGCATACATTCTCAAGTTAATGCGACACTACCAACTGCCAGAGAGCAGACATGTTTCCAAGAATTCTGTGGCTCATTCATCTTCAATCTCTGACAGTGCAGGCAAGTTCCAAGGCAACAGACCCTTTTACTGGAATTCTGAAATTCTCGACTCACGGAAATGA 753 0.4303 MDTSAAKKKRVSRIVGGGLRQLSIIVCKKVESKGRTTYSEVADEIITESAAMQNNKVSLDEQFDEKNIRRRVYDALNVLMSMNIITKNKKEIQWKGLPSMNIKDREELEALRVKLTSRIGKKAAYLQELEEQITGLQSLMLCNQRLNKSGNVPSEGFSLPFILIQTRAHATVEIEISEDMRLVHFDFNSTPFSLHDDAYILKLMRHYQLPESRHVSKNSVAHSSSISDSAGKFQGNRPFYWNSEILDSRK* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01289 250 Pfam E2F/DP family winged-helix DNA-binding domain 18 96 IPR003316 GO:0005667|GO:0006355
Eupl05g01289 250 SUPERFAMILY "Winged helix" DNA-binding domain 17 97 IPR036390 -
Eupl05g01289 250 SMART E2F_TDP_2 14 96 IPR003316 GO:0005667|GO:0006355
Eupl05g01289 250 SUPERFAMILY E2F-DP heterodimerization region 103 226 IPR037241 -
Eupl05g01289 250 FunFam Transcription factor-like protein DPB 102 226 - -
Eupl05g01289 250 FunFam Transcription factor-like protein DPB 9 101 - -
Eupl05g01289 250 CDD DP_DD 101 204 IPR014889 -
Eupl05g01289 250 PANTHER TRANSCRIPTION FACTOR DP 5 226 IPR015648 GO:0005667|GO:0051726
Eupl05g01289 250 PIRSF Txn_factor_DP 1 237 IPR015648 GO:0005667|GO:0051726
Eupl05g01289 250 Pfam Transcription factor DP 104 228 IPR014889 -
Eupl05g01289 250 Gene3D Transcription factor DP 102 236 IPR038168 -
Eupl05g01289 250 SMART DP_2 103 236 IPR014889 -
Eupl05g01289 250 Gene3D - 8 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01289 Eupl-Chr5 35553126 35570341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01289 5 213 E2F-DP Transcription Factor Family AT5G02470 57.346 1.37e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl05g01289 DP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01289 K04683 - nnu:104594567 363.999