Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01284 ATGGAAGAAGAAAAGGGAACAGTGGTTCAGAAGCTGATCGACATCGTCAATGAAATTTATGGAATCTCAGACTACAGATGCGCAATTAAGAAACAGTACTGTAATCTCGAGAGGAGATTGAAGCTCTTGACTCCGATGTTCGAAGAGTTCAAAGAGAGCAAAGAGCCGATCCCTGAAGACACTGTAAGGGCCCTAATTTTGTTGAAGGAAGCTTTGGAATCAGCTAAGGAGATGCTCAGATTCGGAAGCGAAGGGAGCAAGATTTACCTTGTCTTAGAGAGGGAGAAAATAATGAACAAATTCCAGGAAGTGACAAATCAGTTGGAACAAGCTTTGAGTGGAATTTCCTATGACAAACTTGACATATCGGACGAAGTTAAGGAACAGGTTGAGCTTGTGGTTGCTCAGTTCAGAAGAGCCAAAGGACGGGTTGATACACCCGATGCTGAGCTGTATGAGGATCTGTTGTCCATTTACAACAAGAGCAACAATACAGATACAGATCCAGATCCAGCTGTCTTAAGGAGATTGGCTGAAAAGTTACAGTTGATGAGCATAGTGGACCTCAAACAAGAGTCACTAGCTTTGCATGAGATGGTTGTCACCAGTGGTGGACATCCTGGGGAAAGCATAGAAAAGATGTCTATGCTACTGAAAAAAATTAAGGATTTTGTGCAGACTGAAAACATCGACATAGGTGCTTCGGCAAGCGAAAAATGTCTTCCTTCAGGTGTCAGCGGGCAGCCCTCTGCTGATGTGAGTACCAAATCTCCAGTCATTCCAGATGATTTCCGCTGTCCAATATCGCTGGAGTTGATGAGAGATCCAGTCATCGTATCCACAGGGCAGACCTATGAACGAGAGTGCATTGAGAAATGGCTTGAAGCAGGTCATGGCACGTGCCCAAAGACACAGCAGACCCTTTCCAGCGCGGCTCTCACACCCAACTATGTCTTGCGTAGTCTCATAGCCCAGTGGTGTGAGGGCCATGGGATGGAACCACCCAAACGACCAAGCAATTCCTGGCCCAGTAAGACCACGTCTGTCTGCTCCCCAGCTGAACGTGCAAAGATTGATATTCTCCTTTGCAAACTCACATCTGGCAACCTTGAGGACCAGCGATCTGCTGCAGGTGAGCTCCGGCTTCTTGCCAAGCGCAACACAGACAACCGTGTGTGCATCGCTGAGGCTGGTGCCATCCCCCACCTTGTAGGCCTCCTGTCCACGTCTGACCCTCGCACCCAGGAGCATGCTGTCACCGCGCTCCTCAATCTTTCCATCTGTGATGATAACAAAGGGAGCATCATACGTTCTGGGGCTGTACCGGGAATAGTGCATGTACTCAAGAAGGGGAGCATGGAGGCACGGGAGAATGCAGCTGCCACACTTTTCAGCCTGTCTGTGGTGGATGAGAACAAGGTGACAATTGGTGCATCGGGGGCAATCCCAGCACTTGTGATATTGCTGAGTGAAGGTAGCCAGCGGGGGAAGAAGGATGCAGCGACAGCACTCTTCAACCTGTGCATATACCAAGGGAACAAGGGAAGGGCAGTTAGGGCAGGAGTAGTGCCCACGTTGATGAGGCTGCTTACAGAACCTGGAGGTGGAATGGTGGACGAGGCATTGGCCATACTTGCAATATTGGCGAGCCACTCGGAGGGAAAAGCAGCAATCGGAGCAGCAGAAGCTGTGCCGGTGTTGGTAGAGGTAATTAGGAGCGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTGCTGGTGCACCTGTGTGGTGGAGACCAACAGCATCTGGCAGTGGTGCAGGATCTTGGGTTGATGGGTCCGCTGTTGGACCTGGCACAAAATGGCACAGACAGAGCCAAGCGGAAGGCTGCACAACTGCTCGAGCGTATGAGCAGGTTTGCTGAGCAACAGAAGCAAGCCCAGGCACAAGCTGAGGCTCAGACCCAGCAGTTACGGTTGCCATCTTCAGCAAGTTGTGTAGATTGA 1989 0.5033 MEEEKGTVVQKLIDIVNEIYGISDYRCAIKKQYCNLERRLKLLTPMFEEFKESKEPIPEDTVRALILLKEALESAKEMLRFGSEGSKIYLVLEREKIMNKFQEVTNQLEQALSGISYDKLDISDEVKEQVELVVAQFRRAKGRVDTPDAELYEDLLSIYNKSNNTDTDPDPAVLRRLAEKLQLMSIVDLKQESLALHEMVVTSGGHPGESIEKMSMLLKKIKDFVQTENIDIGASASEKCLPSGVSGQPSADVSTKSPVIPDDFRCPISLELMRDPVIVSTGQTYERECIEKWLEAGHGTCPKTQQTLSSAALTPNYVLRSLIAQWCEGHGMEPPKRPSNSWPSKTTSVCSPAERAKIDILLCKLTSGNLEDQRSAAGELRLLAKRNTDNRVCIAEAGAIPHLVGLLSTSDPRTQEHAVTALLNLSICDDNKGSIIRSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVTIGASGAIPALVILLSEGSQRGKKDAATALFNLCIYQGNKGRAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHSEGKAAIGAAEAVPVLVEVIRSGSPRNRENAAAVLVHLCGGDQQHLAVVQDLGLMGPLLDLAQNGTDRAKRKAAQLLERMSRFAEQQKQAQAQAEAQTQQLRLPSSASCVD* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01284 662 SUPERFAMILY ARM repeat 358 639 IPR016024 -
Eupl05g01284 662 SUPERFAMILY RING/U-box 252 336 - -
Eupl05g01284 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 439 481 IPR000225 GO:0005515
Eupl05g01284 662 MobiDBLite consensus disorder prediction 639 662 - -
Eupl05g01284 662 Gene3D - 7 118 IPR036537 GO:0007166
Eupl05g01284 662 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Eupl05g01284 662 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Eupl05g01284 662 Pfam U-box domain 260 330 IPR003613 GO:0004842|GO:0016567
Eupl05g01284 662 CDD MLKL_NTD 10 138 - -
Eupl05g01284 662 Gene3D - 347 451 IPR011989 -
Eupl05g01284 662 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Eupl05g01284 662 FunFam RING-type E3 ubiquitin transferase 259 333 - -
Eupl05g01284 662 Coils Coil 617 651 - -
Eupl05g01284 662 FunFam RING-type E3 ubiquitin transferase 341 434 - -
Eupl05g01284 662 FunFam RING-type E3 ubiquitin transferase 435 534 - -
Eupl05g01284 662 Gene3D - 452 647 IPR011989 -
Eupl05g01284 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 333 IPR013083 -
Eupl05g01284 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Eupl05g01284 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
Eupl05g01284 662 PANTHER U BOX DOMAIN-CONTAINING 30 634 - -
Eupl05g01284 662 Pfam Armadillo/beta-catenin-like repeat 387 426 IPR000225 GO:0005515
Eupl05g01284 662 Pfam Armadillo/beta-catenin-like repeat 552 590 IPR000225 GO:0005515
Eupl05g01284 662 Pfam Armadillo/beta-catenin-like repeat 470 508 IPR000225 GO:0005515
Eupl05g01284 662 FunFam RING-type E3 ubiquitin transferase 535 652 - -
Eupl05g01284 662 CDD RING-Ubox_PUB 261 313 IPR045210 -
Eupl05g01284 662 SMART arm_5 469 509 IPR000225 GO:0005515
Eupl05g01284 662 SMART arm_5 510 550 IPR000225 GO:0005515
Eupl05g01284 662 SMART arm_5 387 427 IPR000225 GO:0005515
Eupl05g01284 662 SMART arm_5 551 591 IPR000225 GO:0005515
Eupl05g01284 662 SMART arm_5 428 468 IPR000225 GO:0005515
Eupl05g01284 662 SMART arm_5 593 633 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01284 Eupl-Chr5 35484094 35495742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01284 1 662 U-box Gene Family AT3G46510 69.532 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01284 - - nnu:104594561 1026.54