Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01258 ATGGGGGGGATTAAAGTCGAGCAGTGTTGCCTTGAGAACAAGCAGTCAGCTGCCGCTTCGAGCTCCTCTGTTTCCGAGGGCAATTGCAGCGTCGCCCTGAAGTCCCCTGAGATTTGCAGCCCTGCTACAACTTCCCCATCTACATCTCATCGGAGAACCACTGGTCCTATAAGGCGAGCGAAGGGTGGTTGGACTCCAGAGGAGGATGAGACATTAAGAAATGCTGTTGAAGTTTTCAAGGGAAAGTGTTGGAAGAAAATAGCTGAATCTTTCCCTGATAGATCAGAAGTGCAATGTCTACATCGATGGCAGAAGGTTCTCAATCCAGAGCTTATTAAGGGACCATGGACCCAGGAGGAAGATGATAGAATCATTGAATTGGTATCAAAGTATGGGCCCACAAAATGGTCTGTTATAGCAAAATCCTTGCCAGGTCGCATAGGAAAACAATGTCGGGAAAGGTGGCACAATCATTTAAACCCAATGATAAAAAGAGATGCTTGGACCTTGGACGAGGAACTTGCACTCGTGAATGCCCACCTGATACACGGGAACAAATGGGCAGAAATAGCGAAGGTTTTACCTGGCAGGACTGATAACTCAATAAAGAATCACTGGAACAGTTCCTTGAAGAGAAAAATAGATTTCTATTTGGCTACAGGGGAGCTTCCGCCAGTTCCAAAGACTGGGCAAAATGGTGCCAAGGATATATCCAGACCTACAGCTAGTGGAAAAATTTTCGTTTGTGCTAATAAAGGGTTGAGCTCTACCACCCAAAATTCCCCAGGAATTGCATATTTGTGTAAATTGAAAGAAGACTGCAAGGACCGGTTGGAGTCCTCGACCCCACAATTCCTAGGTACAGATGCTTCAACAGGTGTACTGGTAGCTGGCCCCACTAACTCTGATGATGTTGATTGCAAGGTACAGGTACCAAAATTAGATCTTAGCTATAGCGCATCTGATTCAACACCTAAGTCAGTGAAATATATAAGCAATGTGGAAATTGATCGAGATAACAAGGTTGCTCAAATACCAGTGCAATTTGAGAATCCAACATTTGGTTCTTTGCACTATGAGCCACAACAGTTAGAGAACTGTGGTATTCCTTTGGATTCTGATCTCTTAAATGTGTATTGCTCCATGCAACAGACATACAACTCAAGTTCGGTTATGTCACCTATCAGTTTTTTCACACCACCTTGTGTGAAGGGTACTAGTTTGGGTGGGCTAAGCCCGGAATCTATATTAAAGAATGCTGCTAAGAGCTTCCCAAATACCCCATCCATATTAAGAAAAAGAAATAGGGAAGCTCATACTCCACTACCCCCTGATACAGTTGAGCGAACAGACGGGGTAAAAGTTAACAGTTTATGTACTCCTGAAGGAAAGAAAAGATCTGGGAATAAACAAGAACAGTCTGGGTCTCTAAATGTAAGTTTGTGCGAGAGTCTTGATTGTAATGGTAGCAGCACTTTTGGGCTGCACAACAGGAAGGCCTTCAATGCCTCTCCTCCATATCGGTTAAGATCGAGCCGAATTGCTCTTTTCAAGTCGGTGGAGAAGCAACTTGAATTCACGTTAGATGAAGATAAGTTTGACAATCATGCCAAATCAATGAATTTGGCCATCAGGGGGAATCCTCATGTTACAGAGGATTGTTCACAAATGAAGATGAGGGTAACCTAA 1689 0.4369 MGGIKVEQCCLENKQSAAASSSSVSEGNCSVALKSPEICSPATTSPSTSHRRTTGPIRRAKGGWTPEEDETLRNAVEVFKGKCWKKIAESFPDRSEVQCLHRWQKVLNPELIKGPWTQEEDDRIIELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPMIKRDAWTLDEELALVNAHLIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKRKIDFYLATGELPPVPKTGQNGAKDISRPTASGKIFVCANKGLSSTTQNSPGIAYLCKLKEDCKDRLESSTPQFLGTDASTGVLVAGPTNSDDVDCKVQVPKLDLSYSASDSTPKSVKYISNVEIDRDNKVAQIPVQFENPTFGSLHYEPQQLENCGIPLDSDLLNVYCSMQQTYNSSSVMSPISFFTPPCVKGTSLGGLSPESILKNAAKSFPNTPSILRKRNREAHTPLPPDTVERTDGVKVNSLCTPEGKKRSGNKQEQSGSLNVSLCESLDCNGSSTFGLHNRKAFNASPPYRLRSSRIALFKSVEKQLEFTLDEDKFDNHAKSMNLAIRGNPHVTEDCSQMKMRVT* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01258 562 CDD SANT 115 159 IPR001005 -
Eupl05g01258 562 Pfam Myb-like DNA-binding domain 113 159 IPR001005 -
Eupl05g01258 562 Pfam Myb-like DNA-binding domain 165 208 IPR001005 -
Eupl05g01258 562 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Eupl05g01258 562 Gene3D - 60 112 - -
Eupl05g01258 562 SMART sant 60 109 IPR001005 -
Eupl05g01258 562 SMART sant 112 161 IPR001005 -
Eupl05g01258 562 SMART sant 164 212 IPR001005 -
Eupl05g01258 562 CDD SANT 64 107 IPR001005 -
Eupl05g01258 562 FunFam Transcriptional activator Myb isoform A 113 164 - -
Eupl05g01258 562 FunFam Transcription factor MYB3R-2 166 231 - -
Eupl05g01258 562 SUPERFAMILY Homeodomain-like 110 206 IPR009057 -
Eupl05g01258 562 CDD SANT 167 210 IPR001005 -
Eupl05g01258 562 PANTHER MYB PROTEIN-RELATED 61 146 - -
Eupl05g01258 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 107 IPR017930 -
Eupl05g01258 562 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Eupl05g01258 562 FunFam Transcriptional activator Myb isoform A 60 112 - -
Eupl05g01258 562 ProSiteProfiles Myb-like domain profile. 108 159 IPR001005 -
Eupl05g01258 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 214 IPR017930 -
Eupl05g01258 562 Gene3D - 113 164 - -
Eupl05g01258 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 163 IPR017930 -
Eupl05g01258 562 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Eupl05g01258 562 MobiDBLite consensus disorder prediction 40 66 - -
Eupl05g01258 562 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Eupl05g01258 562 Gene3D - 166 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01258 Eupl-Chr5 35167971 35178373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01258 2 539 MYB Transcription Factor Family AT3G09370 47.455 1.56e-143 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g01258 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01258 K09422 - nnu:104597196 752.281