Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01254 ATGAAGGAGAGGCAGCGTTGGAGAGCTGAAGAGGATGCCCTGTTACGTGCGTATGTGAAGCAATATGGCCCGAGAGAGTGGAACCTCGTGTCCCAGCGCATGAGCACACCTCTCGACAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAGAACTACCTCAAACCTGGTATCAAGAAGGGATCCCTCACCGAGGAGGAGCAGCATCTTGTCATCCGCCTTCAGGCCAAGCACGGCAACAAGTGGAAGAAGATTGCAGCTGAGGTCCCTGGTCGCACTGCAAAGAGGCTAGGCAAGTGGTGGGAAGTGTTCAAGGAGAAGCAGCAAAGGGAACAGAAGGAGAACAACAAGGCCCTCGACCCAATTGAAGAGGGCAAGTACGACCGCATCCTTGAGACATTCGCAGAGAAGCTTGTGAAAGAGCGTCCAACCCCTCCATTCCTCATGGTCACGTCTAATGGTGGTTTCCTTCACTCTGATCCACCTGCTCCTCCACCAACGATGCTTCCCCCATGGCTGTCCAATTCGAACGGCACACCTACTGTTAGAGCATCCTCTCCGTCTGTTGCTCTGACTCTCTCCCCCTCAACAGTAACTCCGCCTCCCACCATCCCATGGCTGCAGACTGAAAGAGGAAGTACAGATAATCCCCCCCTTGTGTTGGGCAGTTTGCCACCGCACGGGGCAGCACCTACAGGTGGAGACAGCCTGATGGTTTCCGAGCTTGCGGAGTGTTGCAGAGAGTTGGAAGAGGGTCACCGAGCTTGGGCAGCACATAAGAAGGAAGCAGTCTGGAGGCTTAGGAGGGTGGAACTACAGCTGGAGTCTGAGAAGGCTTGTCGTCGGAGGGAGAAAATGGAGGAGATAGAGTCAAAGGTGAGGGCTCTCAGGGAAGAACAGAAGGCGACGATGGAGAGGATCGAGGCAGAGTACAGGGAACAATTAGCAGGCCTGAGGAGGGATGCTGATGCCAAGGAGCAGAAACTGGCAGAGCAGTGGGCTGCGAAGCACATGCGCCTCACAAAATTTCTAGAGCAGATGGGATGCCGACCCAGGCCCGCAGAACCCAATTGCAGGTTGGTACCTACAACAACAGTCCCGGTTCTGGTTCTGTTTACAGTATCAAAACAGGTGGATCCAGACCAGAACTGA 1149 0.544 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMSTPLDRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKALDPIEEGKYDRILETFAEKLVKERPTPPFLMVTSNGGFLHSDPPAPPPTMLPPWLSNSNGTPTVRASSPSVALTLSPSTVTPPPTIPWLQTERGSTDNPPLVLGSLPPHGAAPTGGDSLMVSELAECCRELEEGHRAWAAHKKEAVWRLRRVELQLESEKACRRREKMEEIESKVRALREEQKATMERIEAEYREQLAGLRRDADAKEQKLAEQWAAKHMRLTKFLEQMGCRPRPAEPNCRLVPTTTVPVLVLFTVSKQVDPDQN* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01254 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Eupl05g01254 382 Gene3D - 62 119 - -
Eupl05g01254 382 Gene3D - 4 58 - -
Eupl05g01254 382 CDD SANT 6 53 IPR001005 -
Eupl05g01254 382 SMART sant 3 55 IPR001005 -
Eupl05g01254 382 SMART sant 58 106 IPR001005 -
Eupl05g01254 382 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 353 - -
Eupl05g01254 382 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Eupl05g01254 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Eupl05g01254 382 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Eupl05g01254 382 FunFam MYB-related transcription factor 4 58 - -
Eupl05g01254 382 Pfam Myb-like DNA-binding domain 7 68 - -
Eupl05g01254 382 CDD SANT 63 104 IPR001005 -
Eupl05g01254 382 Coils Coil 285 327 - -
Eupl05g01254 382 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01254 Eupl-Chr5 35125661 35131922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01254 1 349 MYB Transcription Factor Family AT2G37630 70.685 9.51e-174 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g01254 Myb_DNA-bind_6 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01254 K09422 - nnu:104602458 620.542