Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01235 ATGGAGATGGGGGACCAGTACGGGCTGCCGGATCTACGGCAATTGATGGCCGGAAGAACCCATTTCCCTGCCATCCCACAAGCTGCAGAACAGTTTTCCGGCCACCGGAACCTTCCAACCGGGCAGCATTACGAGATGATGATGTTGGGTCGTCAAGTAAGTGAGCTGTTGCCTCGCGGGGTAGTCGACTTTCGTTCTGATTCTACAACTACTACTAACTCTACTACTACTACCACTACTACTACTTCTGCTGCTGCTCTTTGTGGGTTGGAGATGGATGGTTGTATTGGAGGTGATGGAGGGAATGGTAGATGGCCCAGGCAAGAGACTCTCACCCTTCTCGAGATCAGATCTCGTCTTGATCCCAAGTTCAAGGAGGCTAATCAGAAAGGACCCTTGTGGGATGAAGTCTCTAGAATAATGGCAGAGGAACACGGGTATCAAAGGAGTGGGAAGAAATGTAGGGAGAAGTTTGAAAATTTGTACAAGTACTATAAGAAGACTAAGGAAGGCAAGGCTGGGAGACAGGATGGGAAACACTATAGGTTCTTTCGTCAGCTTGAAGCTCTTTATGGAGAAACTAGCAATTCAGTCTCAGTCTCAGAAACCTATGTTGTTGGAAACAATCTTCAATTTCAAACCACAAACAACACCACTAGCCGTCCAAATCAAGAATCCTTGCAAGCTCATAAGTTCAGTGAGAGTCTTAGCCTCTCTAATTCCTCTGAATTGGACACTTCGTCCTCCGAAGACAACGACAACGATCTCGGCTTGATGGAAAACGATTCAATGGAGAAGAAGAAAATGAAAGATAACCAAAGTCTTAAAAGGGGTCGAAAGAGCTGGAAGGCGAAAATAAGGGACTTCGTGGACTCACAGATGAAGAAGTTAATGGAGACACAAGAGGCCTGGTTGGAGAAGATGTTGAAAACTCTAGAACACAAGGAACAAGAGAGGATGTCTAGAGAGGAAGAATGGAGGAAGCAAGAAGCAGCCCGACTCGATAGAGAACATAAATTTTGGGCTAGTGAACGGGATTGGGTTGTAGCTCGAAATGCCGCTTTAATGGAGGTCTTACAGAAATTGACAGGGAAAGAAGTAAAGGCTTCGTCTCCGGAGGAGCTAATGGAAACAGACCTTCATGAAAACAACGAAAACCAGAACGAGAATGGCGGCGAAACAGTACTGGAAAGCACTGTAAATAGTAATAGATGGCCGGAACCTGAGACCTTGAGTCTAATACAACTGAGAACCAGCATGGAATCAAGGTTTCAACAAAGTGGATGTTCAAAGGGAGCCCTGTGGGAAGAGATTTCAGCAAAGATGGTTTGTTTTGGCTATGATCTGAGTGCGAAGAGATGCAAAGAGAAGTGGGAGAATCTGAACAAGTGTTTTAGAAAAAACAAGGAGTGTAACAAGAAACGGAAAGAGAATTCAAGAACATGTCCTTTTAATTTCCATGATTCCACATTCTGTGGTCATGAACAAGGTCATGAAACTGTGGGGCTTCAACCAAATGATGGTCCTTCTCCTTCAAATTCTAATGCAGGCACTACGGTGCACGATAGCTGCTTTCGCTTTCTGATGACTGAAGGGGAGAACTTGTGGGAGAATTATGGTGTGAAGCTCAACAAAGGGGAGAACCAGTAA 1650 0.4509 MEMGDQYGLPDLRQLMAGRTHFPAIPQAAEQFSGHRNLPTGQHYEMMMLGRQVSELLPRGVVDFRSDSTTTTNSTTTTTTTTSAAALCGLEMDGCIGGDGGNGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMAEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGETSNSVSVSETYVVGNNLQFQTTNNTTSRPNQESLQAHKFSESLSLSNSSELDTSSSEDNDNDLGLMENDSMEKKKMKDNQSLKRGRKSWKAKIRDFVDSQMKKLMETQEAWLEKMLKTLEHKEQERMSREEEWRKQEAARLDREHKFWASERDWVVARNAALMEVLQKLTGKEVKASSPEELMETDLHENNENQNENGGETVLESTVNSNRWPEPETLSLIQLRTSMESRFQQSGCSKGALWEEISAKMVCFGYDLSAKRCKEKWENLNKCFRKNKECNKKRKENSRTCPFNFHDSTFCGHEQGHETVGLQPNDGPSPSNSNAGTTVHDSCFRFLMTEGENLWENYGVKLNKGENQ* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01235 549 MobiDBLite consensus disorder prediction 387 401 - -
Eupl05g01235 549 CDD GT1 104 169 - -
Eupl05g01235 549 MobiDBLite consensus disorder prediction 213 278 - -
Eupl05g01235 549 PANTHER FI21293P1 72 538 - -
Eupl05g01235 549 ProSiteProfiles Myb-like domain profile. 103 162 IPR001005 -
Eupl05g01235 549 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Eupl05g01235 549 Pfam Myb/SANT-like DNA-binding domain 403 484 IPR044822 -
Eupl05g01235 549 MobiDBLite consensus disorder prediction 213 254 - -
Eupl05g01235 549 FunFam Trihelix transcription factor GT-2 405 467 - -
Eupl05g01235 549 SMART sant 101 164 IPR001005 -
Eupl05g01235 549 SMART sant 401 464 IPR001005 -
Eupl05g01235 549 FunFam trihelix transcription factor PTL-like 105 167 - -
Eupl05g01235 549 MobiDBLite consensus disorder prediction 497 516 - -
Eupl05g01235 549 Coils Coil 305 325 - -
Eupl05g01235 549 MobiDBLite consensus disorder prediction 379 401 - -
Eupl05g01235 549 Gene3D - 105 167 - -
Eupl05g01235 549 Gene3D - 405 467 - -
Eupl05g01235 549 CDD GT1 403 469 - -
Eupl05g01235 549 MobiDBLite consensus disorder prediction 259 278 - -
Eupl05g01235 549 ProSiteProfiles Myb-like domain profile. 397 462 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01235 Eupl-Chr5 34908805 34911615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01235 6 549 Trihelix Transcription Factor Family AT5G03680 45.649 2.74e-147 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl05g01235 Myb_DNA-bind_4 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01235 - - nnu:104612483 762.681