Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01231 ATGATTGCTTCGGGCATTAACTTGGTGATGACAGTTATTGGATTTGCAGTGAGTACGATGTTCATCGTATTCGTCTGCACGAGGCTCTTTTGCGCCAGGATCCAATCGAATGCTTCCAGACGATCCTTCCCAACAGCAGCTAGATCTGATCTTGGCCTTCTAGAGCGTGGGCTTCATGGCCTGGAGCCTGTTGTTGTAGCCAACTTTCCTACAAAGAAGTTCAGCGATGAGTTTTTCTCGTCTGGCGAAGATGCGCAATGCACAGTGTGCCTTGCAGAGTACCAAGAGAAGGACGTACTGAGAATCCTGCCATACTGCGGGCACTCCTTCCACGTCGCCTGCATAGATATATGGCTGCAGCAGCATTCCACATGTCCCGTTTGTCGGATTTCTCTTCGTGATTCACCCGAGAGAAAACGTGTGATGCAACATATGTTCAGTTCGGCCGTCCGATCTCCTTATAGCATGGATTCCCTCGCCTCACATTCATATAACTGCTTCTACACTGGCCACGGGTATTCCTCAAGAACTGTTGACAACCAAAGGATGGAGACCATTCAGGAGGATCAGTTCACATCCGAGCTTGATGCAGCAGAAACCAGAGAGAGCATGTCCTCCTTGACAGAGAGGAATTGGGTTCCCAAAGACACTGGCCTCCATGGATCTGGAAACAAGCAGGTTGAGAGTCCATCCAACCCATAG 702 0.4957 MIASGINLVMTVIGFAVSTMFIVFVCTRLFCARIQSNASRRSFPTAARSDLGLLERGLHGLEPVVVANFPTKKFSDEFFSSGEDAQCTVCLAEYQEKDVLRILPYCGHSFHVACIDIWLQQHSTCPVCRISLRDSPERKRVMQHMFSSAVRSPYSMDSLASHSYNCFYTGHGYSSRTVDNQRMETIQEDQFTSELDAAETRESMSSLTERNWVPKDTGLHGSGNKQVESPSNP* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01231 233 CDD RING-H2_EL5-like 86 129 - -
Eupl05g01231 233 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Eupl05g01231 233 MobiDBLite consensus disorder prediction 196 212 - -
Eupl05g01231 233 SMART ring_2 87 128 IPR001841 -
Eupl05g01231 233 MobiDBLite consensus disorder prediction 196 233 - -
Eupl05g01231 233 FunFam E3 ubiquitin-protein ligase ATL6 52 135 - -
Eupl05g01231 233 SUPERFAMILY RING/U-box 81 134 - -
Eupl05g01231 233 Pfam Ring finger domain 86 129 IPR001841 -
Eupl05g01231 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 134 IPR013083 -
Eupl05g01231 233 PANTHER OS11G0150450 PROTEIN 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01231 Eupl-Chr5 34871676 34881813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01231 60 129 C3H Transcription Factor Family AT1G20823 52.857 1.47e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01231 - - nnu:104586939 369.007