Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01221 ATGGATTTTGAAGACGAATCTTCATCTTCTTCCTCAAGCGAACTTCATTCCTCGCACGTGTCATCTACTGCAGGCTCTCCTCCAACACAGACACACGAGCCAACCATTACGCACAAGCGGAAGGCCGGTAGGAAGAAGTTCCGAGAGACACGACATCCTATCTATAGAGGTGTAAGGCAAAGAAATGGTGGGAAATGGGTTTGCGAGGTGCGTGAGCCGCACAAGAAGTCACGGATATGGCTTGGGACCTTCCCCACCCCTGAAATGGCTGCTAGGGCTTATGATGCGGCGGCGTTGACTCTCAGGGGCAAGTCTACGCCGCTAAATTTCCCCGACTCGGCGTGCCTCATACCACCAGCCAAGTCATCTTCAGCTAAGGACATACAATCGGCAGCTCTTGATGCTGCGGAAGCTTTTCGGCCTCCGACGTGTTCGTCATCGTCTTCCTCCCCCTCTGTCGAATTGCAACGTGTAGAGAGCCCAGAGAAGCTTCCAAATCCTTCCGCGACATTCTTGGATGAGGAGGCATTGTTTAACATGCCGGGTTTAATTACCAGCATGGCAGAAGGGATGCTCCTTACACCGCCAGCTATGAAAAAAGGGTTCGACTGGGATGACGTGGATTGCAACATGGACTTCTCTCTGTGGAGGGACTAA 657 0.5221 MDFEDESSSSSSSELHSSHVSSTAGSPPTQTHEPTITHKRKAGRKKFRETRHPIYRGVRQRNGGKWVCEVREPHKKSRIWLGTFPTPEMAARAYDAAALTLRGKSTPLNFPDSACLIPPAKSSSAKDIQSAALDAAEAFRPPTCSSSSSSPSVELQRVESPEKLPNPSATFLDEEALFNMPGLITSMAEGMLLTPPAMKKGFDWDDVDCNMDFSLWRD* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01221 218 MobiDBLite consensus disorder prediction 139 166 - -
Eupl05g01221 218 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Eupl05g01221 218 MobiDBLite consensus disorder prediction 1 52 - -
Eupl05g01221 218 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Eupl05g01221 218 MobiDBLite consensus disorder prediction 8 33 - -
Eupl05g01221 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 217 IPR045277 GO:0003700
Eupl05g01221 218 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Eupl05g01221 218 MobiDBLite consensus disorder prediction 38 52 - -
Eupl05g01221 218 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Eupl05g01221 218 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Eupl05g01221 218 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Eupl05g01221 218 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Eupl05g01221 218 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Eupl05g01221 218 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Eupl05g01221 218 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01221 Eupl-Chr5 34780797 34782002 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01221 39 216 AP2-EREBP Transcription Factor Family AT4G25470 51.366 1.03e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl05g01221 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01221 - - nnu:104586936 304.293