Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01205 ATGGCAGAGAGCGAGGAAGAGCCAATTGTCGGCCCTGGTCCGGCCCCTCGCTCTCGCCCCAAGCGTCCCCTGCAATTTGAGCAGGCTTTTCTTGATTCTATTCCGTCTGCTAACATGTATGAGAAAAGTTATATGCATCGGGATGTGGTCACACATGTTGCTGTTTCAGCAGCAGATTTCTTCTTAACTGGAAGCACTGATGGGCATTTGAAATTTTGGAAGAAAAAGGCTGTTGGCATTGAGTTTGCTAAACATTTCAGATCTCACCTCGGAGCCATTGAAGGACTGGCTGTTAGTGTTGATGGCTTACTTTGTTGTACAATTTCGAACGATCATTCTGTGAAGATATACGATGTTGTCAACTATGATATGATGGTCATGATACGCCTACCGTTTGTACCTGGTGCAATTGAATGGGTTTACAAGCAAGGAGATGTCAAAGCTAAGCTTGCCGTTAGTGATCGCAACTCCTCGTATGTGCACATATACGATGCACGAGCTGGTTCAAATGAACCCATTATCTCTAGAGAGATACACATGGGGCCAATAAAGGTTATGAAGTACAACCACCTATTTGACACCGTGATATCTGCAGATGGCAAAGGAATCATAGAATACTGGTGCCCTGCTACACTTCAATTCCCGGAAGATGGAGTGAATTTCAGATTGAAAAGTGACACCAGTCTTTTCGAAATTGTAAAGTGCAAAACAACTGTTTCTGCAATTGAGGTGAGCCCAGATGGTAAGCAATTTGCCATTACATCTCCTGATCGTAGGATACGTGTATTTTTGTTTAAAACTGGTAAATTGAGACGAGTGTACGATGAATCTCTTGAGGTGGCCCAAGATCTCCAAAGAAGTGATGCTCCCCTTTATCGGCTGGAAGCAATTGATTTTGGGCGAAGAATGGCTGTTGAAAAGGAAATTGAGAAAACAGAAAATGTGCCACAACCAAATGCAATCTTTGATGAGAGCTCGAACTTTCTCATATATGCAACTCTCCTGGGTGTAAAAATCGTAAATTTGCACACAAATAAAGTTACTCGAATTCTTGGAAAGGTGGAGAACAATGATAGATTCTTGAGAATTGCTTTGTATCAAGGTGACAAAAACAGTAAAAAGGTAAGAAAAATTCCTGCTGCTGCAGCAAACGTCAATGAGAGCAAAGAGCCTTTGACGGATCCCACTCTCCTATGTTGTGCATTCAAGAAACACAGGATTTATCTGTTCAGTCGGAGAGAACCAGAGGAACCTGAAGATGCAACTAAGGGAAGGGATGTATTTAATGAAAAACCTCCCCCTGATGAACTTTTGGCTGTATCAGATATTGGAAAATCCGTCACAACATCTCTTCCTGACAATGTTATATTGCACACCACACTGGGTGATATTCACATGAGACTTTACCCAGAAGAATGTCCCAAAACTGTGGAGAATTTCACAACACACTGCCGAAATGGTTATTATGATAACCTCATTTTCCACCGGGTCATCAAAGGCTTCATGATACAGACAGGAGATCCTTTGGGAGATGGCACTGGTGGGCAGTCAATTTGGGGAAGGGAGTTTGAAGATGAGTTTCATAAAAGCTTAAGGCACGATAGACCTTTCACAGTGTCTATGGCTAATGCGGGGACAAACACCAACGGCTCTCAGTTTTTCATCACCACCGTTGCCACACCATGGCTGGATAATAAGCATACAGTCTTTGGTAGAGTCATAAAGGGAATGGATGTCGTACAGGGTATCGAGAAGGTGAAGACAGATAAGACAGACAAACCATATCAAGATGTAAAAATCTTGAATGTGACTGTTCCCAAGTCTTGA 1827 0.4258 MAESEEEPIVGPGPAPRSRPKRPLQFEQAFLDSIPSANMYEKSYMHRDVVTHVAVSAADFFLTGSTDGHLKFWKKKAVGIEFAKHFRSHLGAIEGLAVSVDGLLCCTISNDHSVKIYDVVNYDMMVMIRLPFVPGAIEWVYKQGDVKAKLAVSDRNSSYVHIYDARAGSNEPIISREIHMGPIKVMKYNHLFDTVISADGKGIIEYWCPATLQFPEDGVNFRLKSDTSLFEIVKCKTTVSAIEVSPDGKQFAITSPDRRIRVFLFKTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTENVPQPNAIFDESSNFLIYATLLGVKIVNLHTNKVTRILGKVENNDRFLRIALYQGDKNSKKVRKIPAAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPDELLAVSDIGKSVTTSLPDNVILHTTLGDIHMRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGTNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQGIEKVKTDKTDKPYQDVKILNVTVPKS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01205 608 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 455 605 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 Pfam WD domain, G-beta repeat 84 118 IPR001680 GO:0005515
Eupl05g01205 608 Pfam WD domain, G-beta repeat 50 74 IPR001680 GO:0005515
Eupl05g01205 608 SUPERFAMILY WD40 repeat-like 37 352 IPR036322 GO:0005515
Eupl05g01205 608 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 40 303 - -
Eupl05g01205 608 Gene3D - 32 217 IPR015943 GO:0005515
Eupl05g01205 608 CDD cyclophilin_WD40 456 603 - -
Eupl05g01205 608 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 489 506 IPR020892 GO:0003755|GO:0006457
Eupl05g01205 608 MobiDBLite consensus disorder prediction 1 21 - -
Eupl05g01205 608 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 450 604 IPR044666 -
Eupl05g01205 608 SMART WD40_4 79 118 IPR001680 GO:0005515
Eupl05g01205 608 SMART WD40_4 37 74 IPR001680 GO:0005515
Eupl05g01205 608 SMART WD40_4 225 264 IPR001680 GO:0005515
Eupl05g01205 608 SMART WD40_4 169 208 IPR001680 GO:0005515
Eupl05g01205 608 Gene3D - 443 608 IPR029000 -
Eupl05g01205 608 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 451 605 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 468 483 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 565 580 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 494 506 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 552 564 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 537 552 IPR002130 GO:0000413|GO:0003755
Eupl05g01205 608 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 436 606 - -
Eupl05g01205 608 Gene3D - 218 292 IPR015943 GO:0005515
Eupl05g01205 608 SUPERFAMILY Cyclophilin-like 452 605 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01205 Eupl-Chr5 34453809 34475239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01205 455 605 U-box Gene Family AT5G67530 45.695 1.03e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01205 K12736 - nnu:104587992 1162.52