Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01180 ATGAAGCTGCTCTGTCCTTCTTCCATCGCCACCGCCACCGCCACCACCAAAATAACTACAATTCATCCACTCAAAACCCAAGTCCAGGCTTCCGTTATCTTCCCCATAAAAATTAAGTTACCCAATTCAAAGAAGAAAAACGATTTCAGAATCAGCTCTGCTTTGAATCCTTACATCCCCTCAAATGTCTCTTCAAAAACAAGCCCAACAACAACAACAACTTCATCTTTTTCTACTACAAGTGACCAATACCACTGGATGGTGGTGATGAAGAAACCCCCAGAAGAGTTTCGCTCCAAACCCGAAATCATCGATTATTACGTCAAAACACTAGCTAGGGTTTTGGGAAGCGAGAAGGAAGCTCAGATGTGTATTTACGATGCGTCCTGGGAGACCCATTTCGGTTTTTGTTGCGACATTGATGAAGCGACTTCTCGTGAGCTTGCTCGTTTATCAGAGGTTTTATCAGTTAGGCCGGACCCGGATATTGCCTCTTCAGAGAAGACCTATAGTTTGTCGAACCTTCGATTGGGTAGTCTATCGAACTTGAATGGTGGAGCTCCTCCATTGTTTTCCGAGGGGAATTCCAAGTACTGGCTTATTCGAATGGAAAAACCAGCAGTTGAAGTTGTCACAAAGGCACAGATGGTTGATCATTATGCTCAGATACTAACCAAGGTTTTGGGGAACGAGAAAGATGCACAGATGTGTATATATCACATTTCTTGGCAAAACAATTTTGGGTTCTGTTGTGAACTCAATGAAGAGTGTGCACAGGAATTGGCTGGTGTGCCTGGTGTTTTGTCTGTTCGTCCGGACGATCATTTTGAGTGGGAGAATAAGGATTATGGAGGTGATGGTAAATCTTGCAAGTCAATGGATTCGCCTGATACATCCAACATCAAAACCAAAAGGCTTTTCGTAACTGGCCTCTCCTTTTATACTTCAGAGAAAACTTTACGCGCAGCATTCGAAGGCTTTGGTGAGCTTGTTGAAGTTAAGATTATAATGGACAAGATATCAAAAAGATCCAAGGGTTATGCATTCATCGAGTACACCACAGAGGAAGCTGCAAGTGCAGCTCTCAAAGAGATGAATGGCAAGATCATCAATGGCTGGATGATAGTTGTTGATGTTGCCAAAACAAACCCACCGAAATACAACAGGGGCCAACCAAGGCCTACAATCTAA 1191 0.4324 MKLLCPSSIATATATTKITTIHPLKTQVQASVIFPIKIKLPNSKKKNDFRISSALNPYIPSNVSSKTSPTTTTTSSFSTTSDQYHWMVVMKKPPEEFRSKPEIIDYYVKTLARVLGSEKEAQMCIYDASWETHFGFCCDIDEATSRELARLSEVLSVRPDPDIASSEKTYSLSNLRLGSLSNLNGGAPPLFSEGNSKYWLIRMEKPAVEVVTKAQMVDHYAQILTKVLGNEKDAQMCIYHISWQNNFGFCCELNEECAQELAGVPGVLSVRPDDHFEWENKDYGGDGKSCKSMDSPDTSNIKTKRLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPKYNRGQPRPTI* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01180 396 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 187 373 IPR039206 GO:0016554
Eupl05g01180 396 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 191 277 IPR037045 -
Eupl05g01180 396 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 67 164 IPR037045 -
Eupl05g01180 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 372 IPR000504 GO:0003723
Eupl05g01180 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Eupl05g01180 396 Gene3D - 279 395 IPR012677 -
Eupl05g01180 396 FunFam Organelle RRM domain-containing protein 1, chloroplastic 187 276 - -
Eupl05g01180 396 SMART rrm1_1 305 378 IPR000504 GO:0003723
Eupl05g01180 396 FunFam Organelle RRM domain-containing protein 1, chloroplastic 277 395 - -
Eupl05g01180 396 SUPERFAMILY RNA-binding domain, RBD 295 393 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01180 Eupl-Chr5 34040021 34045295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01180 293 391 C2H2 Transcription Factor Family AT2G19380 33.333 1.67e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01180 - - nnu:104588267 563.533