Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01177 ATGGCGGAAGAGCACAGATGCGAAGCTCCCGAAGGGCACCATCTTTGCGCTAACAACTGTGGATTCTTCGGCAGTCCTGCAACACTAAACCTCTGTTCTAAATGTTACAGAGACCTTAGCCTTAAAGAAGAACAGGCCTCCTCCGCTAAATTTGCCGTCGAGAAATCCCTTGCTGCACCATCTTCATCAACCATTACTCCTGTCTCTCCTCCTGCCATAACTCTACCGGAAACCGCCGATGATCGCCGGATTCCTTTCTCCTTCGACATCGGTGTATCACCGTCAGAATCACCAGTTCCGACGGCGACAACGCAGCCGAACCGTTGCTCGACGTGTCGGAAGCGTGTCGGTCTTACAGGGTTCCGGTGCCGGTGCGGGACCACGTTCTGTGCGTCGCACCGGTATCCAGAGAAGCACGGATGCACGTTCGATTTCAAGGCGGTGGGGAGAGAGGCAATAGCCAAGGCCAATCCGGTCGTTAAAGCCGAGAAGCTTGAGAAGATCTGA 507 0.5424 MAEEHRCEAPEGHHLCANNCGFFGSPATLNLCSKCYRDLSLKEEQASSAKFAVEKSLAAPSSSTITPVSPPAITLPETADDRRIPFSFDIGVSPSESPVPTATTQPNRCSTCRKRVGLTGFRCRCGTTFCASHRYPEKHGCTFDFKAVGREAIAKANPVVKAEKLEKI* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01177 168 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Eupl05g01177 168 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Eupl05g01177 168 Gene3D - 1 64 - -
Eupl05g01177 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 168 - -
Eupl05g01177 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 62 - -
Eupl05g01177 168 SUPERFAMILY AN1-like Zinc finger 95 163 IPR035896 -
Eupl05g01177 168 Pfam A20-like zinc finger 15 37 IPR002653 GO:0003677|GO:0008270
Eupl05g01177 168 Gene3D - 89 164 IPR035896 -
Eupl05g01177 168 Pfam AN1-like Zinc finger 109 145 IPR000058 GO:0008270
Eupl05g01177 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Eupl05g01177 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Eupl05g01177 168 FunFam Zinc finger AN1-type containing 6 91 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01177 Eupl-Chr5 34003965 34005891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01177 1 168 C2H2 Transcription Factor Family AT3G52800 47.895 1.70e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01177 - - vvi:100264822 259.61