Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01165 ATGGGTATTGGGAACTACCATGTAGAGGACATGGGTTTCTGCTTTCAAACTACTCCGACCTTCATTGAATGGCTCAAGCCAACAACTTCTCCATCTTCATCTTCGTCTTCTTCAATAACCCAACAAACTGATCATCAGTTCACAAGTGTAAAGAGCTGCTTACAACTACCTCTCTTTTATCAACAGCAACAGCAACAAGAATTCGAAGAAGAAGAAGAAGAAGAAGAGCTGTTTCAGCGGAATACCCAATGCTTGCCTCTTCTGAACAGGTTAACAGAGACTAAGGCGCCCTTGAAAGAAGAGGAGATTAAGGCACAGAAGGAGTGGTTTGGTGTTAAAGATGAGAAGTCAGAGAACATTACCGTGGCCTTGCACATTGGTTTGCCAAACATAGGAGATTCTGATGGTGAGATCAAGTCCTTGGACCATAAGGAGGAGGAACCCATGAAGAATAAGAGCTTTGAAGGTTGTTCTTTGAGCACTGAGAGTAGGTTTTGGATCCCCACACCAGCTCAGATCCTTATTGGCCCAACGCAGTTCACTTGCTCCGTCTGCAACAAGACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGACCAGAATCACTTAAAGGAACACAACCAACCGCAATGTTGAGGCTACCTTGCTATTGTTGTGCTCATGGCTGCAAGAACAACATCAACCATCCCCGAGCGAAGCCATTGAAGGATTTTAGAACTCTTCAGACCCATTACAAGAGAAAGCATGGTGTGAAGCCATTTATGTGTAGAAAATGTGGCAAATCATTTGCAGTACGGGGAGATTGGAGAACACATGAAAAGAATTGCGGGAAGCTATGGTATTGTACATGCGGATCTGAGTTTAAACATAAAAGATCACTCAAGGATCACATAACATCCTTCGGAAAGGGTCACTCTCCACACCCGCCGCCGTCTCGTAAAAGTTTTGAAGATGATCAGAAAGAATGCATCACAGGTTCTGAAGATGAAGTGGGCTCATCATGA 1035 0.4406 MGIGNYHVEDMGFCFQTTPTFIEWLKPTTSPSSSSSSSITQQTDHQFTSVKSCLQLPLFYQQQQQQEFEEEEEEEELFQRNTQCLPLLNRLTETKAPLKEEEIKAQKEWFGVKDEKSENITVALHIGLPNIGDSDGEIKSLDHKEEEPMKNKSFEGCSLSTESRFWIPTPAQILIGPTQFTCSVCNKTFNRYNNMQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGVKPFMCRKCGKSFAVRGDWRTHEKNCGKLWYCTCGSEFKHKRSLKDHITSFGKGHSPHPPPSRKSFEDDQKECITGSEDEVGSS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01165 344 MobiDBLite consensus disorder prediction 309 344 - -
Eupl05g01165 344 PANTHER ZINC FINGER PROTEIN WIP2 22 331 IPR043584 GO:0003700|GO:0010468
Eupl05g01165 344 Coils Coil 61 81 - -
Eupl05g01165 344 Pfam C2H2-type zinc finger 180 199 - -
Eupl05g01165 344 SMART c2h2final6 180 202 IPR013087 -
Eupl05g01165 344 SMART c2h2final6 264 284 IPR013087 -
Eupl05g01165 344 SMART c2h2final6 227 259 IPR013087 -
Eupl05g01165 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Eupl05g01165 344 MobiDBLite consensus disorder prediction 320 336 - -
Eupl05g01165 344 FunFam Zinc finger protein WIP2 233 315 - -
Eupl05g01165 344 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Eupl05g01165 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 284 IPR013087 -
Eupl05g01165 344 Gene3D Classic Zinc Finger 179 202 - -
Eupl05g01165 344 Gene3D Classic Zinc Finger 222 313 - -
Eupl05g01165 344 SUPERFAMILY beta-beta-alpha zinc fingers 171 202 IPR036236 -
Eupl05g01165 344 SUPERFAMILY beta-beta-alpha zinc fingers 250 284 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01165 Eupl-Chr5 33856279 33859339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01165 9 335 C2H2 Transcription Factor Family AT1G08290 51.811 1.20e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl05g01165 zf-C2H2_6 5.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01165 - - nnu:104588387 508.064