Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01148 ATGGATTTCTTCGAGGGAAATTTCGAATTGAAGGAGATTCAGAAGCTCGAAGGTCACACTGATAGGGTTTGGAGCCTCGCTTGGAATCCGGCTACTGGAGTTGCAGGAATTCCAGCGATGTTGGCGTCTTGCAGCGGCGACAAGACCGTTCGAATATGGCAGCAGAATCCATCCGGCCGGTCTTCGGATTCATGGGAGTGCAAGGCAGTTCTTGAAGAAACACACACTCGGACAGTTAGGTCTTGTGCCTGGTCTCCGTCTGGAAAATTATTGTCCACTGCAAGTTTCGACGCCACGACCGCTATCTGGGAACATATTGGGGATGATTTTGAATGCGTCTCCACTTTAGAGGGTCATGAGAACGAAGTCAAAAGTGTTTCGTGGAATTCATCCGGGTCACTACTTGCTACATGCAGTCGAGATAAATCTGTTTGGATCTGGGAATTACAGCCGGGTAACGAGTTTGAATGTGTTTCAGTGTTGCAAGGACATACACAGGATGTGAAGATGGTTCAGTGGCATCCACTTATGGATGTTTTATTTTCTTGTAGTTACGATAACACTATTAAGGTTTGGGCAGAGGATGGTGATAGTGATGATTGGCATTGTGTTCAAACTTTAGGTGAATCTAACAACGGACACTCATCTACAGTCTGGGCATTATCTTTCAACTCTACAGGAGATCAAATGGTTACTTGTAGTGATGATCTTACTTTAAAGATATGGGAAACTAACAGTAAAACAATGCAGCCAACTGGAGATGGCTATGCGCCTTGGAAACACCTTTGCACTCTCACGGGGTATCATGATCGGACAATATTCTCAGTTCATTGGTCAAGAGAGGGCATAATTGCTAGTGGAGCCGCTGATGATGCTATACGTCTTTTTGTTGAGAATAAAGATGGTTTGATTGATGGACCGGCCTACAAATTGCTGCTGAAGAAGGAAAAGGCCCATGACATGGATATAAATTCAGTGCAATGGAGCTCCAAAGAAACCCGGCTACTAGCTTCTGCAAGCGATGATGGGACTATAAAGATATGGGAGTTGGTATCCGTGCCCTGA 1065 0.4507 MDFFEGNFELKEIQKLEGHTDRVWSLAWNPATGVAGIPAMLASCSGDKTVRIWQQNPSGRSSDSWECKAVLEETHTRTVRSCAWSPSGKLLSTASFDATTAIWEHIGDDFECVSTLEGHENEVKSVSWNSSGSLLATCSRDKSVWIWELQPGNEFECVSVLQGHTQDVKMVQWHPLMDVLFSCSYDNTIKVWAEDGDSDDWHCVQTLGESNNGHSSTVWALSFNSTGDQMVTCSDDLTLKIWETNSKTMQPTGDGYAPWKHLCTLTGYHDRTIFSVHWSREGIIASGAADDAIRLFVENKDGLIDGPAYKLLLKKEKAHDMDINSVQWSSKETRLLASASDDGTIKIWELVSVP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 104 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 200 243 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 9 54 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 309 349 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 109 148 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 258 297 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 154 193 IPR001680 GO:0005515
Eupl05g01148 354 SMART WD40_4 64 104 IPR001680 GO:0005515
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 252 IPR001680 GO:0005515
Eupl05g01148 354 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 352 IPR028608 GO:0016226|GO:0097361
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Eupl05g01148 354 PANTHER WD40 PROTEIN CIAO1 10 351 IPR028608 GO:0016226|GO:0097361
Eupl05g01148 354 Pfam WD domain, G-beta repeat 66 103 IPR001680 GO:0005515
Eupl05g01148 354 Pfam WD domain, G-beta repeat 202 242 IPR001680 GO:0005515
Eupl05g01148 354 Pfam WD domain, G-beta repeat 317 348 IPR001680 GO:0005515
Eupl05g01148 354 Pfam WD domain, G-beta repeat 111 147 IPR001680 GO:0005515
Eupl05g01148 354 Pfam WD domain, G-beta repeat 156 192 IPR001680 GO:0005515
Eupl05g01148 354 Pfam WD domain, G-beta repeat 12 53 IPR001680 GO:0005515
Eupl05g01148 354 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Eupl05g01148 354 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 8 353 - -
Eupl05g01148 354 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Eupl05g01148 354 SUPERFAMILY WD40 repeat-like 8 348 IPR036322 GO:0005515
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 192 IPR001680 GO:0005515
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 104 - -
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 246 - -
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 192 - -
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 354 IPR001680 GO:0005515
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 150 - -
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 157 IPR001680 GO:0005515
Eupl05g01148 354 CDD WD40 12 349 - -
Eupl05g01148 354 ProSitePatterns Trp-Asp (WD) repeats signature. 230 244 IPR019775 -
Eupl05g01148 354 Gene3D - 39 353 IPR015943 GO:0005515
Eupl05g01148 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 354 - -
Eupl05g01148 354 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Eupl05g01148 354 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Eupl05g01148 354 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01148 87 353 U-box Gene Family AT2G33340 26.022 1.86e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01148 K24730 - ming:122087547 661.759