Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl05g01134 | ATGCCGAGAGCGAAGAGGAATGCCGCAGCGCCTCGAAAGCCTGTTGAACCTGAAAAGCCGACTGAACCCGAAAAGCCAGTCGAACCTGAAGAACAGGTGGACTTTGATGGAGACAATGATCCTGAGGAGACAATGGAGGAAGAGGTTGAGTATGAAGAAGTAGAGGAAGAAGTGGAAGAGGTGGAAGAAGAGGAAGAGGTAGAAGAAGAAGAGGAGGTGGAAGAAGAGGAAGAGGAGGAGGAAGAGGTTACGGATGCTAATGGAGCTGATGCACAGGCAAGCCCTAGTGGCGATGAAGAGATGAAAGCTGCCAAGGCAGAGGACGAGGATGAGAGCAAAAAACATGCTGAGCTTCTTGCCCTGCCCCCTCATGGTTCTGAGGTATATGTCGGTGGCATTCCTCATGATGCTTCTGAAGAAGATTTGAGAAGCTTTTGTGAGTCTGTGGGAGAGGTGACTGAGGTCAGAGTAATGAAAGGCAAAGATTCGGGGGAGAACAAAGGCTATGCGTTTGTGACCTTTAGAACTAAAGAATTGGCTGCTAAAGCCATTGAAGATCTGAATAATACCGAATTCAAGGGAAGAAAGATAAAGTGTTCGACATCTCAAGCAAAGCATCGATTGTTCATCGGAAATGTTCCAAGAAGCTGGGCAGAGGAGGATTTGAAGAAGATTGTGACAGAGGTTGGCCCCGGAATTAATGCTGTGGAATTGCTGAAGGATCCGCAGAACTCCAGCCGTAACCGGGGCTTTGCTTTCATTGAGTATTATAACCATGCATGTGCTGAATATTCAAGGCAGAAGATGTCAACCCCTAAATTCAAGCTAGACAATAATGCTCCAACTGTGAGCTGGGCTGACCCTAAGAATGCAGACTCTTCTCCTGCTTCACAGGTGAAAGCAGTCTATGTAAAGAATTTGCCGAAAAACGTAAATCAGGATAAGTTGAGAGAGCTATTTGAACACCATGGAGAGATCACAAAAGTAGTGTTGCCGCCTGCAAAGTCCGGACAGGAAAAGAGCAGATTTGGGTTTGTACACTTTGCTGAGAGGTCCAGTGCCATGAAGGCACTCAAGAACACCGAGAAATATGAAATTGATGGTCAAGTTCTCGAGTGTTCCCTTGCAAAGCCACAGGTGGATCGGAATTCTGATGCGGGATCAAATTCACAGAAGTCAGCTTTGCTTCCAAGCTATCCACCTCGTATGGGATATGGGTTGGCTGGCGGCGCCTATGGTGGTCTAAGTGCAGGATACGGCGCTGCAGGCTTTGCACAGCCCCTGATCTACGGCAGGGGTCCCACTCCTGCTGGCATGGCGATGATGCCAATGCTTTTGCCTGATGGACGGATCGGATATGTCCTGCAACAACCTGGAGCACAGCCGCAAACCCCCCCTTCACAGCAGAGAGGTGGCAACAGGAGTGGTGGTGGCTCAAGCAGGGGAAGGCAGGGCAGTGACAGTGGCCGTGGGCGCCGGTATAACCCATATTGA | 1494 | 0.4933 | MPRAKRNAAAPRKPVEPEKPTEPEKPVEPEEQVDFDGDNDPEETMEEEVEYEEVEEEVEEVEEEEEVEEEEEVEEEEEEEEEVTDANGADAQASPSGDEEMKAAKAEDEDESKKHAELLALPPHGSEVYVGGIPHDASEEDLRSFCESVGEVTEVRVMKGKDSGENKGYAFVTFRTKELAAKAIEDLNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWAEEDLKKIVTEVGPGINAVELLKDPQNSSRNRGFAFIEYYNHACAEYSRQKMSTPKFKLDNNAPTVSWADPKNADSSPASQVKAVYVKNLPKNVNQDKLRELFEHHGEITKVVLPPAKSGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQVDRNSDAGSNSQKSALLPSYPPRMGYGLAGGAYGGLSAGYGAAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPQTPPSQQRGGNRSGGGSSRGRQGSDSGRGRRYNPY* | 498 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl05g01134 | 497 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 128 | 198 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 302 | 371 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 208 | 273 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 33 | 86 | - | - | |
| Eupl05g01134 | 497 | Gene3D | - | 289 | 420 | IPR012677 | - | |
| Eupl05g01134 | 497 | SMART | rrm1_1 | 127 | 200 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | SMART | rrm1_1 | 301 | 374 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | SMART | rrm1_1 | 207 | 284 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | CDD | RRM_SF | 128 | 200 | - | - | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 381 | 396 | - | - | |
| Eupl05g01134 | 497 | Coils | Coil | 44 | 86 | - | - | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 453 | 497 | - | - | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 9 | 32 | - | - | |
| Eupl05g01134 | 497 | Gene3D | - | 207 | 287 | IPR012677 | - | |
| Eupl05g01134 | 497 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 300 | 378 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | SUPERFAMILY | RNA-binding domain, RBD | 123 | 291 | IPR035979 | GO:0003676 | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 457 | 485 | - | - | |
| Eupl05g01134 | 497 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 126 | 204 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 207 | 287 | - | - | |
| Eupl05g01134 | 497 | Gene3D | - | 30 | 206 | IPR012677 | - | |
| Eupl05g01134 | 497 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 206 | 288 | IPR000504 | GO:0003723 | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 380 | 399 | - | - | |
| Eupl05g01134 | 497 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 13 | 480 | - | - | |
| Eupl05g01134 | 497 | SUPERFAMILY | RNA-binding domain, RBD | 294 | 390 | IPR035979 | GO:0003676 | |
| Eupl05g01134 | 497 | SMART | rrm2_1 | 127 | 200 | IPR003954 | GO:0003676 | |
| Eupl05g01134 | 497 | SMART | rrm2_1 | 301 | 374 | IPR003954 | GO:0003676 | |
| Eupl05g01134 | 497 | FunFam | RNA recognition motif-containing protein | 27 | 206 | - | - | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
| Eupl05g01134 | 497 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 289 | 399 | - | - | |
| Eupl05g01134 | 497 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl05g01134 | Eupl-Chr5 | 33433439 | 33440198 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl05g01134 | 128 | 494 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.666 | 4.39e-21 | 94.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl05g01134 | K13161 | - | nnu:104607661 | 694.886 |