Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01133 ATGGATACGTCAAGCCCCGCTGTATTTGTCAACGCAGAGCTGTTGCCGATGTATGTAGGAAGAAAGGTCCGGGCAGTGGTTCAGGTTGTGCGATCTGAAAGTGGATCCATTGTGGGGAAATCTACAGATGAACGTCAACTAGTTATAAAGGGCTCTTTGCCATCCTACCCTCTAACAAATTTTGTGGAGGTGATTGGTATTGCTGACAGCAACCAGTCCATTCGTGCTGAAATATTCACCAACTTTGGTGACACATTTGACACACTCCCATACAATCGGCTATGCCAACTTGCAAACGGGGAATATAAAAGTTTGTTCCTCTAA 324 0.4506 MDTSSPAVFVNAELLPMYVGRKVRAVVQVVRSESGSIVGKSTDERQLVIKGSLPSYPLTNFVEVIGIADSNQSIRAEIFTNFGDTFDTLPYNRLCQLANGEYKSLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01133 107 Pfam Replication factor A protein 3 1 100 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Eupl05g01133 107 CDD RPA3 6 106 - -
Eupl05g01133 107 Gene3D - 2 107 IPR012340 -
Eupl05g01133 107 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Eupl05g01133 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01133 Eupl-Chr5 33425090 33429660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01133 1 107 Core DNA Replication Machinery Family AT4G18590 62.617 5.87e-49 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01133 K10740 - vvi:100264936 168.703