Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01107 ATGTCGAAGAGAAAGGTCAGGGAACCCAAGGAGGAGAACGTGACACTTGGACCCACTGTACGAGAAGGAGAGCATGTTTTCGGTGTGGCCCACATATTTGCATCATTTAATGACACATTCATCCATGTGACTGATTTATCGGGACGTGAAACCATGGTTCGCATCACTGGTGGTATGAAGGTCAAGGCTGACAGGGATGAATCTTCACCATATGCAGCCATGCTTGCAGCGCAAGATGTTGCACAAAGATGCAAGGAGCTCGGCATTACAGCTCTGCACATTAAGCTTCGTGCTACTGGAGGAAACAAGACAAAGACACCTGGTCCTGGTGCTCAGTCTGCACTTAGGGCCCTAGCTCGTTCTGGAATGAGAATTGGTCGCATTGAGGACGTGACCCCAATTCCCACAGATAGCACTCGGAGAAAGGGTGGCAGGAGAGGGAGGAGGCTGTAA 453 0.5033 MSKRKVREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01107 150 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl05g01107 150 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 3 145 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl05g01107 150 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl05g01107 150 SUPERFAMILY Translational machinery components 23 148 - -
Eupl05g01107 150 FunFam 40S ribosomal protein S14 1 150 - -
Eupl05g01107 150 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Eupl05g01107 150 Gene3D Ribosomal protein S11 1 150 IPR036967 GO:0003735|GO:0005840|GO:0006412
Eupl05g01107 150 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01107 Eupl-Chr5 33124084 33129553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01107 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 92.086 9.61e-95 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01107 K02955 - ming:122086568 268.085