Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01096 ATGCCCACGCCGAAACAAAACCCTCTCACCAGATCCCGCGATCGAGAAGAACAGAATCAACAGATCGATAGAAGTAATCGAAAGCGACCGGCGATGTTTCAAGACGATTTCTGGATGATCGGAAATCCCTCGCCGTCTCCATCCTCATCTCAATCCCCATCTCCATCTCCTTGGTCTCGTCTCCAAGACAAGCTCTTCGAGCGAGCACTCGTAATTTTCTCCGAGCAAACCCCCGATCGATGGCAAAAGATCGCCGGCCAAGTCCCCGGTAAAACACCGGTGGAAGTCCGGGAGCACTACGAGGCTTTGGTTTATGACGTGTCGGAGATCGATTCTGGACGAGTCGAATTGCCGTCTTACGCGGATAACTCGTTCACGCCGGGTTGGGCTTCCGAGTGTGGTACGAGTCAGATATCGTTTTCTTCGAAGCAGAAGCAGACCGAGACAGAGAGAAAGAAAGGGATTCCCTGGACTGAAGAAGAGCACAGGCTTTTTCTCATTGGACTGCAGAAATATGGGAAGGGCGATTGGAGGAGTATTTCAAGAAACGCGGTGGTGTCGAGAACGCCGACCCAGGTGGCTAGCCACGCTCAGAAATACTATCTTCGTCTGAACTCAATGAAGAAGGAGAAGAAGAGGTCCAGTATCCATGATATAACCACAGTCGAAAGCAACCCTGTGGCTCAACCTAGTAATCAAAGTCTGGTTGCACCATTGGGCGACCCTGATCAGCCGACAATGCAGGCAATGGGCCCACCAACTTCGTTTCATGGTCAAGGTCAAGGATGTTCTTCGGTATATCAACGATTAGGATTTCCCATGTAA 825 0.5067 MPTPKQNPLTRSRDREEQNQQIDRSNRKRPAMFQDDFWMIGNPSPSPSSSQSPSPSPWSRLQDKLFERALVIFSEQTPDRWQKIAGQVPGKTPVEVREHYEALVYDVSEIDSGRVELPSYADNSFTPGWASECGTSQISFSSKQKQTETERKKGIPWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKYYLRLNSMKKEKKRSSIHDITTVESNPVAQPSNQSLVAPLGDPDQPTMQAMGPPTSFHGQGQGCSSVYQRLGFPM* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01096 274 FunFam transcription factor MYB1R1 155 206 - -
Eupl05g01096 274 SUPERFAMILY Homeodomain-like 150 206 IPR009057 -
Eupl05g01096 274 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 51 236 IPR043363 -
Eupl05g01096 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 152 203 IPR006447 GO:0003677
Eupl05g01096 274 ProSiteProfiles Myb-like domain profile. 149 201 IPR001005 -
Eupl05g01096 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 205 IPR017930 -
Eupl05g01096 274 ProSiteProfiles SANT domain profile. 157 205 IPR017884 -
Eupl05g01096 274 MobiDBLite consensus disorder prediction 1 59 - -
Eupl05g01096 274 MobiDBLite consensus disorder prediction 41 59 - -
Eupl05g01096 274 CDD SANT 156 200 IPR001005 -
Eupl05g01096 274 MobiDBLite consensus disorder prediction 212 231 - -
Eupl05g01096 274 Gene3D - 155 207 - -
Eupl05g01096 274 CDD SANT 63 104 IPR001005 -
Eupl05g01096 274 SMART sant 54 106 IPR001005 -
Eupl05g01096 274 SMART sant 153 203 IPR001005 -
Eupl05g01096 274 ProSiteProfiles Myb-like domain profile. 50 104 IPR001005 -
Eupl05g01096 274 FunFam Transcription factor SRM1 50 117 - -
Eupl05g01096 274 Pfam Myb-like DNA-binding domain 156 200 IPR001005 -
Eupl05g01096 274 MobiDBLite consensus disorder prediction 9 31 - -
Eupl05g01096 274 SUPERFAMILY Homeodomain-like 53 104 IPR009057 -
Eupl05g01096 274 Gene3D - 49 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01096 Eupl-Chr5 32990643 32993717 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl05g01096 Myb_DNA-binding 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01096 - - nnu:104589256 324.709