Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01088 ATGGCGGCGTTCAGAGGTATCCCTCGCCTCTTTGGACTTCACTCTCGATCAAACCCTAAATCTTCTCTCCTTCCTCCAACTCAGCTCATCTGTTACAGAGGAATCGCTTCTAAGCTCTTCGTTGGAGGGCTATCGTTCTACACGACTGAAAATGCTTTGTCAGAGGCCTTCTCACAATTTGGCCAAGTACTTGAAGCTAAAGTAATAACAGACAGAGTCTCTGACAAATCTAAAGGTTTCGGATTCGTGACCTTTGCATCAGAAGATGAAGCCCATAATGCCCTCACAGAAATGAATGGAAAGGTACTGAATGGACGTGTTATTTTTGTGGACAATGCAAAGCCGCCCAGATCGCATTTTAATGATGGGATGCCCATAGCCAGAGGACCTCCCGAACCAATGGTTGACAATTGA 414 0.4565 MAAFRGIPRLFGLHSRSNPKSSLLPPTQLICYRGIASKLFVGGLSFYTTENALSEAFSQFGQVLEAKVITDRVSDKSKGFGFVTFASEDEAHNALTEMNGKVLNGRVIFVDNAKPPRSHFNDGMPIARGPPEPMVDN* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01088 137 SUPERFAMILY RNA-binding domain, RBD 38 123 IPR035979 GO:0003676
Eupl05g01088 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Eupl05g01088 137 Gene3D - 32 131 IPR012677 -
Eupl05g01088 137 SMART rrm1_1 38 111 IPR000504 GO:0003723
Eupl05g01088 137 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 34 121 - -
Eupl05g01088 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01088 Eupl-Chr5 32866515 32873185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01088 37 114 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 6.31e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01088 - - nnu:104607624 211.46