Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01080 ATGTCCATAAACCATTTCTCTTCAGAGCACACAGCAGGAGGGTTGTGGTGGACGCAAGCGCAAGGCATGATGGACCCAACACCAAACATCCCTTCCTCCAAATACAAAGGTGTAGTCCCTCAGCCCAACGGTCGTTGGGGCGCCCAAATCTACGAAAACCACCACCGTGTTTGGCTTGGCACCTTCGACACTGAAGAGGCCGCTGCCCAATCCTACGATCGTGCCGCTGCTATGTTCCGCGGCCCCGAGGCCGCCCTCAATTTCCAACAAAACGAAGATCTAAACGGTAATTACGAAGAAGACGAAGAGCAACAGCCACAACAACAACAAATATCTCCACAACAAGAATCAATCACGGAAGTTGTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAGAAGCCATGTTCGAGAAGCCGTTGACGCCAAGCGACGTGGGTAAGCTTAACCGCCTTGTCATACCCAAACAACACGCAGAGAAGTACTTTCCACTCGGTGGTGACTCAAGCGAGAAAGGGTTGCTACTGAGTTTCGAGGACGAGTCCGGAAAGCTTTGGAGGTTTCGTTACTCTTATTGGAATAGTAGTCAAAGCTACGTGTTGACTAAAGGCTGGAGCCGTTTCGTTAAGGAGAAGCACCTCGACGCCGGCGACGTTGTGTTGTTCGAGCGGAGCCGCCTAGACAGACAGAGACTCTTTATTCTGTGGAGGCGTCGTCCCGCCCCGGTGCAAGATAGCGGAGTGGCGCAGGCGGTGACAGCTCCTATAGCCGCGTGGACCCACTTCTATTCTGCGCACCCTTATCCTTCGCACCCTCATGGGCCACTATCATACCAACCTGAATGTCTCCATGCAGTAGAGCCGCCTGTTCGAAACCCACCCACTACGCCGGGGAACTCGAAGCGACTCAGACTGTTCGGGGTGAATCTAGATTGCCAGCTCGACGAGTCCGACTCACCTAGACCAGACGGTTCGTCTTTGTCGAGCCAGGGTGGAACCCACCTCTTCTACTCACAACTTCATGACTCGAACCATAGTAACCACCAGGACTTGAATTTCTCGGGAGATGTAAACCGAACGAGAAATGGCCCAGGAGGAGATCTGTCGATGTGA 1116 0.5269 MSINHFSSEHTAGGLWWTQAQGMMDPTPNIPSSKYKGVVPQPNGRWGAQIYENHHRVWLGTFDTEEAAAQSYDRAAAMFRGPEAALNFQQNEDLNGNYEEDEEQQPQQQQISPQQESITEVVEEEEEEEEEEEREAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGDSSEKGLLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKHLDAGDVVLFERSRLDRQRLFILWRRRPAPVQDSGVAQAVTAPIAAWTHFYSAHPYPSHPHGPLSYQPECLHAVEPPVRNPPTTPGNSKRLRLFGVNLDCQLDESDSPRPDGSSLSSQGGTHLFYSQLHDSNHSNHQDLNFSGDVNRTRNGPGGDLSM* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01080 371 MobiDBLite consensus disorder prediction 315 334 - -
Eupl05g01080 371 MobiDBLite consensus disorder prediction 341 371 - -
Eupl05g01080 371 SUPERFAMILY DNA-binding pseudobarrel domain 136 241 IPR015300 -
Eupl05g01080 371 ProSiteProfiles AP2/ERF domain profile. 34 89 IPR001471 GO:0003700|GO:0006355
Eupl05g01080 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 324 IPR044800 GO:0003700
Eupl05g01080 371 CDD B3_DNA 137 231 IPR003340 GO:0003677
Eupl05g01080 371 MobiDBLite consensus disorder prediction 320 334 - -
Eupl05g01080 371 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Eupl05g01080 371 Coils Coil 114 135 - -
Eupl05g01080 371 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Eupl05g01080 371 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Eupl05g01080 371 SMART B3_2 138 241 IPR003340 GO:0003677
Eupl05g01080 371 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Eupl05g01080 371 MobiDBLite consensus disorder prediction 98 144 - -
Eupl05g01080 371 Gene3D - 132 246 IPR015300 -
Eupl05g01080 371 FunFam AP2 domain-containing protein RAP2.8 33 90 - -
Eupl05g01080 371 MobiDBLite consensus disorder prediction 341 360 - -
Eupl05g01080 371 SMART rav1_2 34 95 IPR001471 GO:0003700|GO:0006355
Eupl05g01080 371 Gene3D AP2/ERF domain 33 90 IPR036955 GO:0003700|GO:0006355
Eupl05g01080 371 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Eupl05g01080 371 Pfam B3 DNA binding domain 138 240 IPR003340 GO:0003677
Eupl05g01080 371 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Eupl05g01080 371 MobiDBLite consensus disorder prediction 101 118 - -
Eupl05g01080 371 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01080 Eupl-Chr5 32746848 32749158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01080 22 243 RAV Transcription Factor Family AT1G68840 53.689 3.30e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Eupl05g01080 B3 1.9e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01080 K09287 - nnu:104589469 433.721