Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01071 ATGGGACGGGTGCGCACGAAGACTGTGAAGAAGTCCTCTCGACAGGTCATCGAGCGGTATTACTCGCGGATGACCTTAGATTTCCACACGAACAAAAAAATCTTGGAGGAGGTCGCCATCATCCCCTCAAAGCGCCTCCGGAACAAGATAGCTGGGTTCTCTACGCATCTCATGAAGCGCATCCAAAGAGGCCCGGTTCGTGGGATCTCTCTGAAGCTCCAAGAGGAGGAGCGCGAACGTCGCATGGACTTCGTTCCAGACGAGTCTGCCATTAAGACAGATCTAATCGAAGTCGACAAGGAGACCATCGACATGCTCGCTGCCCTTGGCATGGCTGACCTTCCTGGCGTCGTCAAGCAGGCTGAGACGACTCTTGCTCCTGCTCCAGCTTTCGGTAGGGGCGGTGCCGGTGGCCCACCTGGACGGAGATACTGA 435 0.5609 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQRGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETIDMLAALGMADLPGVVKQAETTLAPAPAFGRGGAGGPPGRRY* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01071 144 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Eupl05g01071 144 Pfam Ribosomal S17 1 119 IPR001210 GO:0003735|GO:0005840|GO:0006412
Eupl05g01071 144 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Eupl05g01071 144 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Eupl05g01071 144 PANTHER 40S RIBOSOMAL PROTEIN S17 1 124 IPR001210 GO:0003735|GO:0005840|GO:0006412
Eupl05g01071 144 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Eupl05g01071 144 FunFam 40S ribosomal protein S17 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01071 Eupl-Chr5 32660080 32661294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01071 1 144 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.690 7.76e-80 230