Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01055 ATGTCTGGTAGCCGGGTTTCGAATCGCTCGGCACAGCCCTCGGGGCAGATCCTGCAATCCTTGAAGCGTCACCTTCCGTTCTCGTCGACCAAGCCGCCGTTCGTTCCTCCGGACGATTACCATCGGTTCTCTGGAGAGAACCGCAGGGTTGCAGATGAGGAAACCGAAGCAATTGTTGTTAGATCTCCTCAGTTGAAGCGGAAGCCCGAAACAGAAGACTATGAAGCGGAGTCTAGTGAGTGGGCTATCAATCCTGGATACACCGAAGTGGTTAATAGTCCCCTCCGAACACCTGTATCAGGAAAAGGGGGAAGGATATACAGCAGGTCAAAGGTCTCAAAGTACAATAGATCTGGGCCTCAAACACCCATGTCAAATGCTGGTTCACCTGGCAATACACTCACTCCAGCTGGTACTTGCCGTTACGACAGCTCTCTAGGTCTCTTGACAAAAAAGTTTATCAATTTGATAAAGCATGCAGAAGATGGTATTCTTGATCTAAACAAAGCTGCTGACACTTTGGAGGTGCAGAAGAGGCGGATATATGATATAACAAATGTCTTGGAAGGAATTGGACTCATAGAGAAGAAGCTTAAGAACAGGATACGCTGGAAGGGACTCGATGTCTCTAGGCCGGGGGAGGTTGACGATGATGTTGCTATTCTACAGGCAGAAGTTGAAAACCTTTCCATGGAGGAGCGCAGACTAGATGATCAAATAAGAGAAATGCAAGAAAGATTGAGGGACCTGAGTGAGGATGAAAACAATCAAAAGTGGCTTTTTGTGACTGAAGAAGACATCAAAGGCCTACCCTGCTTCCAGAATGAGACCTTGATAGCAATCAAAGCTCCACATGGCACCACCCTGGAAGTCCCAGATCCCGATGAGGCCGTTGACTATCCACAAAGAAGATACAGAATCGTCCTTAGAAGCACCATGGGTCCTATTGATGTTTACCTTGTCAGTCAATTTGAGGAGAAATTTGAGGAGATGAATGGTGTTGAGCCACCTCCAAGCCTCCCATTTGAATCAAGTTCGGGGTCTAAAGACAATCACCCAGCAGCAGCAATGGTGACAGAGGAGAGCAGAGGGAAGGAGATAGAATTGCAAGGACAAGATGCTAATAGGATGTGCGCAGATCTTACCGCCTCGCAGGACTTTGTTGGTGGAATCATGAAGATTGTGCCCTCAGACGTTGATAGTGATGCGGATTACTGGCTTTTGTCAGATGCTGGAGTTAGCATCACAGACATGTGGAAAACAGAGCCTGGAGTTGAATGGGATGGGGTGGATACACTTCATGCAGAGGAGTTTGTAATGACTGATATCAGCACAGCTCAGCCACAAACTCCACCATCTAGCATTATCGAAGCGCCATCGGCTGCTAACTCAACTCATAGGTGA 1404 0.4758 MSGSRVSNRSAQPSGQILQSLKRHLPFSSTKPPFVPPDDYHRFSGENRRVADEETEAIVVRSPQLKRKPETEDYEAESSEWAINPGYTEVVNSPLRTPVSGKGGRIYSRSKVSKYNRSGPQTPMSNAGSPGNTLTPAGTCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDVSRPGEVDDDVAILQAEVENLSMEERRLDDQIREMQERLRDLSEDENNQKWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNGVEPPPSLPFESSSGSKDNHPAAAMVTEESRGKEIELQGQDANRMCADLTASQDFVGGIMKIVPSDVDSDADYWLLSDAGVSITDMWKTEPGVEWDGVDTLHAEEFVMTDISTAQPQTPPSSIIEAPSAANSTHR* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01055 467 MobiDBLite consensus disorder prediction 92 132 - -
Eupl05g01055 467 CDD E2F_DD 217 323 IPR032198 GO:0046983
Eupl05g01055 467 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Eupl05g01055 467 MobiDBLite consensus disorder prediction 41 57 - -
Eupl05g01055 467 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Eupl05g01055 467 SUPERFAMILY E2F-DP heterodimerization region 219 323 IPR037241 -
Eupl05g01055 467 Gene3D - 135 208 IPR036388 -
Eupl05g01055 467 PANTHER TRANSCRIPTION FACTOR E2F 66 423 IPR015633 GO:0000978|GO:0006357
Eupl05g01055 467 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Eupl05g01055 467 MobiDBLite consensus disorder prediction 445 467 - -
Eupl05g01055 467 MobiDBLite consensus disorder prediction 111 132 - -
Eupl05g01055 467 FunFam E2F transcription factor 1 135 208 - -
Eupl05g01055 467 Coils Coil 219 253 - -
Eupl05g01055 467 MobiDBLite consensus disorder prediction 331 363 - -
Eupl05g01055 467 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Eupl05g01055 467 MobiDBLite consensus disorder prediction 22 57 - -
Eupl05g01055 467 Gene3D - 213 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01055 Eupl-Chr5 32445146 32455305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01055 14 467 E2F-DP Transcription Factor Family AT2G36010 57.233 1.22e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl05g01055 E2F_CC-MB 1.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01055 K06620 - nnu:104589827 798.505