Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01024 ATGGGAGAAGATCAGAGGAAGCTTTTTTTCACAGTGTTCCTGTGCTTTGCTTCAGTGGTTCTTAGTGCCACAGATCCTAATGACCTTAGAATTCTGAATGAGTTCAGAAAAGGTTTGGAGAACCCAGAGCTTCTGAAATGGCCTGATAAGGGAGATGATCCATGCGGTCCCCCTTTATGGCCTCATGTGGTCTGTCATGGTAACAGAGTTACACAGATTCAGGTTCAGAATATGGGGTTGAAGGGACCTCTCCCTCAGGACTTCAATCAGCTCACCGAGCTCACTAATTTGGGGCTTCAGAGGAACCAATTCAACGGGAAGTTACCGACGTTCAATGGGTTATCCCAATTACAGTACGCATACTTGGGTTCCAATCAGTTCGACACGATACCTTCCGATTTCGTCCATGGCCTTGACAGTTTACAGGTCTTATCTTTGGATAACAATCCGTTGAACAAGACCACAGGGTGGTCCATTCCTACTGAATTGCAGAATTCTCGCCAGTTAACCAATCTGTCTTTGATAAACTGTAGTTTGGTCGGCCCAATGCCAGATTTCTTAGGGAGTATGTCATCTATGACAGCCTTGAAATTGTCCTATAACAAACTCTCTGGGGGGATTCCGGCGAGTTTTAATCAGTCCGGGTTGCAGATTCTATGGTTGAATAATCAGGGCGATGGATTGTCTGGTCCAATAGATGTAATTGCTTCAATGGTTTCTCTGACACAGCTATGGCTACATGGAAACCAGTTCACAGGGATAATTCCAGCAGGTATTGGAGCGCTGTCTTCGCTGACGGATATCGACTTCAACCAAAACAAACTTGTGGGTCTAATTCCTGAGAGCTTAGTGAGTATGAAATTACAGAAGCTGGATTTGAGCAATAACTACCTCATGGGTCCAACCCCGAATTTCACAATTGTCAATGTGACTTACAATAATAATCCATTCTGTCAGTCTGATCGTGGGCTTCCATGCGCACCTGAAGTTACAGCACTTATAGATTTTCTTGGTGGTTTGAATTACCCATTAAAACTTGCTTCTGCATGGAAAGGTAATGATCCATGTTCTCCGTGGTTAGGATTGAGTTGCAATCCAAATCACAAGGTTTCTGTTATCAATTTGCCTAGTTTTCAGCTTAATGGTACTCTGAGCCCTTCAATCGGGAAGCTAGATTCTCTCCTTGAAATTCGACTTGGGACGAACAACATCACAGGTTCAATCCCCATGAATTTGGTTAACTTGAAATCTTTGAGATTGTTGGATCTAAGTGGGAACAATATTGAACCTCCATTACCAAAATTCAGTAGTAGTGTGAAGGTTGTTACCAATGGAAATCAATTACTAAACAGTAATCAGTCTACGACATCCCCATCATCGGATAACAGCCCATCATCAGGAAGTCCAGATTCTCCATCCGGCAACCCATCTTCCCCAGCCACAGGTTCAAAGCCCAATCATGGTAGCTCCAGCCAAGAACAATCCAAACCAAACAATTCCAAAAGGTCTAAACTAGTTGTGATTGTAGTGCCACTTGCAAGTTTTGCACTTTTGGTTCTTCTGGTGGTTCCCCTAAGTATATGCTACTGCAAGAAGAGGAAAGTCACCTCCCAGGCCCCAAGCTCCTTCGTGGTACACCCTAGAGACTCATCTGATCCAGAAAATATGGTTAAGATTGTAGTTTCAAATAACACGAATGGAAGCTTATCTACTATAACAGGGAGTAGTTCTCAGAGTATAAACAGTAGTGGGATGGGTGAAACTCATGTGATCGAGGCTGGGAACCTGGTCATATCAGTTCAGGTTCTCCGTAATGTGACCAAGAATTTCTCTTCAGAAAATGAGCTTGGGCGCGGTGGTTTTGGGACAGTTTATAAGGGGGAGTTGGATGATGGGACAAAAATAGCAGTTAAGAGAATGGAGGCTGGTGTGATTAGCAACAAAGCCTTGGATGAATTTCAGGCTGAAATCGCTGTTCTTTCGAAGGTCCGGCACCGACATCTGGTATCTCTGTTGGGGTACTCCGTTGAAGGCAATGAGAGGCTTCTGGTTTACGAGTATATGCCTCAGGGGGCTCTGAGCAAGCATCTTTTCCACTGGGAGAGTCTGCAATTGGAACCTCTATCTTGGAAGAGGAGGCTCAACGTTGCCTTGGATGTCGCTAGGGGGATGGAATATCTTCATAGTCTGGCCCACCAGAGCTTCATACACAGAGATCTCAAATCTTCAAATATCCTCCTTGGTGATGATTACCGAGCGAAGATTTCAGATTTCGGATTAGTGAAACTTGCACCCGATGGAGAGAAATCCGTTGTGACCAGGCTTGCTGGGACTTTTGGATACTTGGCACCGGAATATGCTGTCACGGGGAAAATCACAACCAAAGCAGACGTCTTCAGTTTTGGAGTGGTGTTGATGGAGCTGCTAACTGGCTTGATGGCACTAGATGAGGACCGGCCTGAGGAGAGCCGATACTTGGCAGCATGGTTCTGGCACATAAAGTCAAGTAGGGAGAAGCTAATGGCTGCCATTGACCCAGCTCTTGATGTGAATGAAGAGACATTCGAGAGCATCTCCATCATAGCTGAACTGGCTGGGCATTGCACAGCAAGGGAGCCCAATCAACGGCCTGATATGGGCCATGCAGTGAACGTGCTCTCCCCACTGGTCGAGAAGTGGAAACCATTCGATGATGACACAGAGGAATATTCAGGCATTGATTACAGTCTACCCCTCACCCAGATGGTCAAGGGCTGGCAGGAAGCAGAAGGTAAGGATAACAGCTATACAGGTCTCGACGACAGCAAGGGAAGCATACCGGCAATGCCCACTGGGTTTGCTGAGTCCTTCACTTCTGCTGATGGTCGGTAA 2871 0.4573 MGEDQRKLFFTVFLCFASVVLSATDPNDLRILNEFRKGLENPELLKWPDKGDDPCGPPLWPHVVCHGNRVTQIQVQNMGLKGPLPQDFNQLTELTNLGLQRNQFNGKLPTFNGLSQLQYAYLGSNQFDTIPSDFVHGLDSLQVLSLDNNPLNKTTGWSIPTELQNSRQLTNLSLINCSLVGPMPDFLGSMSSMTALKLSYNKLSGGIPASFNQSGLQILWLNNQGDGLSGPIDVIASMVSLTQLWLHGNQFTGIIPAGIGALSSLTDIDFNQNKLVGLIPESLVSMKLQKLDLSNNYLMGPTPNFTIVNVTYNNNPFCQSDRGLPCAPEVTALIDFLGGLNYPLKLASAWKGNDPCSPWLGLSCNPNHKVSVINLPSFQLNGTLSPSIGKLDSLLEIRLGTNNITGSIPMNLVNLKSLRLLDLSGNNIEPPLPKFSSSVKVVTNGNQLLNSNQSTTSPSSDNSPSSGSPDSPSGNPSSPATGSKPNHGSSSQEQSKPNNSKRSKLVVIVVPLASFALLVLLVVPLSICYCKKRKVTSQAPSSFVVHPRDSSDPENMVKIVVSNNTNGSLSTITGSSSQSINSSGMGETHVIEAGNLVISVQVLRNVTKNFSSENELGRGGFGTVYKGELDDGTKIAVKRMEAGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSVEGNERLLVYEYMPQGALSKHLFHWESLQLEPLSWKRRLNVALDVARGMEYLHSLAHQSFIHRDLKSSNILLGDDYRAKISDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESRYLAAWFWHIKSSREKLMAAIDPALDVNEETFESISIIAELAGHCTAREPNQRPDMGHAVNVLSPLVEKWKPFDDDTEEYSGIDYSLPLTQMVKGWQEAEGKDNSYTGLDDSKGSIPAMPTGFAESFTSADGR* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01024 956 Gene3D Ribonuclease Inhibitor 26 323 IPR032675 -
Eupl05g01024 956 SUPERFAMILY L domain-like 328 437 - -
Eupl05g01024 956 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Eupl05g01024 956 ProSitePatterns Protein kinases ATP-binding region signature. 616 638 IPR017441 GO:0005524
Eupl05g01024 956 CDD STKc_IRAK 616 889 - -
Eupl05g01024 956 ProSiteProfiles Protein kinase domain profile. 610 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl05g01024 956 FunFam Receptor-like kinase TMK4 26 323 - -
Eupl05g01024 956 FunFam receptor protein kinase TMK1 572 687 - -
Eupl05g01024 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Eupl05g01024 956 SUPERFAMILY L domain-like 23 307 - -
Eupl05g01024 956 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Eupl05g01024 956 MobiDBLite consensus disorder prediction 448 501 - -
Eupl05g01024 956 SMART LRR_typ_2 91 113 IPR003591 -
Eupl05g01024 956 SMART LRR_typ_2 415 439 IPR003591 -
Eupl05g01024 956 SMART LRR_typ_2 138 165 IPR003591 -
Eupl05g01024 956 SMART LRR_typ_2 238 262 IPR003591 -
Eupl05g01024 956 SMART LRR_typ_2 114 137 IPR003591 -
Eupl05g01024 956 Gene3D Transferase(Phosphotransferase) domain 1 688 906 - -
Eupl05g01024 956 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Eupl05g01024 956 Pfam Leucine rich repeat N-terminal domain 328 365 IPR013210 -
Eupl05g01024 956 FunFam receptor protein kinase TMK1 688 905 - -
Eupl05g01024 956 Gene3D Phosphorylase Kinase; domain 1 570 687 - -
Eupl05g01024 956 SUPERFAMILY Protein kinase-like (PK-like) 588 886 IPR011009 -
Eupl05g01024 956 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Eupl05g01024 956 PANTHER OSJNBA0070M12.3 PROTEIN 9 956 - -
Eupl05g01024 956 Pfam Protein tyrosine and serine/threonine kinase 613 884 IPR001245 GO:0004672|GO:0006468
Eupl05g01024 956 MobiDBLite consensus disorder prediction 924 956 - -
Eupl05g01024 956 SMART serkin_6 610 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01024 Eupl-Chr5 31932203 31935846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01024 82 891 Receptor kinase-like Gene Family AT5G07280 32.732 5.80e-84 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Eupl05g01024 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01024 - - nnu:104601395 1447.95