Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01014 ATGGATGGTGTTGAAGTTCCTCAGTATTTCATATGTCCCATAACTCTTCAGATCATGAAAGATCCCGTAACAGTCGTAACGGGCATCACATACGATCGGGAGAGTATCGAGCAATGGTTGTCGTCCGGGAAGAGGACGACATGTCCCGTCACCAAACAGCCCCTGTCGAGAGACTCCGACTTAACCCCAAATCATACTCTACGTCGACTAATCCAGGCATGGTGCACCGTAAATGCATCAAACGGTGTCGATCGAATCCCCACCCCAAAATCACCTCTCAACAAGACTCATGTCCTTAAACTCCTTCAAGACATATGGGTTCCTCAATTGCAGTTGAAAGCCTTGAAGAAGCTTGAGTGTCTTGCGTCTGAGGGCGAAAGGAATAGGAGGTGCATGATAGAAGCTGGCGTAGCCAAGGCAATGGTGTCGTTGATCGTAACGTGTTTCAAAAAGGATGGAACCAATGGTCTTGGTGAAGCTCTAAGTGTTCTACACCTTATTCGGATGCCGATGGATGTAATTAAGCTTCTTACCGTCGAAAATCATGATTTTATCGATTCGATCACATGGGTTTTACGACGAAAGATGGATAATCATGTGGAGGTGAAGACACATGCAGTTTCAGTCTTGAAATCCATCCTAGAAGTAGGATATGCAAATCTACTTGAGCGATTAAAGTCTGAATTATTCCAAGGGATAATAATGATCTTGAGAGATCGGATTTCGCACCAAGCTACTAAGGCTGCCCTACATGTTTTGCAAGAAGCTTGTCCTTGGGGAAGAAATAGAATGAGGATCGTCGAGGCCGGGGCAGTTTACGAGCTCATAGAACTTGAACTCAGTATGCCTGAAAAGAGGATCACTGAACTTGTCTTAGGCACATTGGCTCATCTATGTTCCTGCGCAGATGGGCGAGCTATGTTTCTGAGTCACGCAGGTGGAATTGCAATGGTCACAAAAAGGATCCTTAGAGTTTCACCGACGGCAGACGATCGAGCGATTCGGATTCTTGCATCGATCTGTAAGTTCTCTGCGACAAGTCAGGTTCTTCAAGAGATGTTGAGGGTTGGAGCTGTGACAAAGCTTTGTATGGTTCTTCAGGCAGACAGTTCACCCAACGTGAAAGACAAAGCAAGAGGTGTTCTTAGGTTGCACTCTAATTTGTGGAATAATTCTCCTTGCATTGCTGTTTATTTGTTAACAATGTATCCCAGGTGA 1218 0.4516 MDGVEVPQYFICPITLQIMKDPVTVVTGITYDRESIEQWLSSGKRTTCPVTKQPLSRDSDLTPNHTLRRLIQAWCTVNASNGVDRIPTPKSPLNKTHVLKLLQDIWVPQLQLKALKKLECLASEGERNRRCMIEAGVAKAMVSLIVTCFKKDGTNGLGEALSVLHLIRMPMDVIKLLTVENHDFIDSITWVLRRKMDNHVEVKTHAVSVLKSILEVGYANLLERLKSELFQGIIMILRDRISHQATKAALHVLQEACPWGRNRMRIVEAGAVYELIELELSMPEKRITELVLGTLAHLCSCADGRAMFLSHAGGIAMVTKRILRVSPTADDRAIRILASICKFSATSQVLQEMLRVGAVTKLCMVLQADSSPNVKDKARGVLRLHSNLWNNSPCIAVYLLTMYPR* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01014 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Eupl05g01014 405 PANTHER WDSAM1 PROTEIN 4 396 IPR045185 GO:0061630
Eupl05g01014 405 SUPERFAMILY RING/U-box 4 79 - -
Eupl05g01014 405 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Eupl05g01014 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Eupl05g01014 405 SUPERFAMILY ARM repeat 98 383 IPR016024 -
Eupl05g01014 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Eupl05g01014 405 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Eupl05g01014 405 CDD RING-Ubox_PUB 7 58 IPR045210 -
Eupl05g01014 405 Gene3D - 96 396 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01014 Eupl-Chr5 31736558 31738161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01014 2 404 U-box Gene Family AT2G35930 46.715 7.79e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01014 - - nnu:104601408 554.673