Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01013 ATGGAAGAAATCGATATTCCTCCTTACTTTCTCTGCCCGATTTCCCTGGAAATTTTGAGAGATCCGGTTACAGTCTCAACGGGAATTACCTATGATCGGGAAAACATTGAGAAATGGCTCTTTTCTGGGAAGAACAATACATGCCCGGTCACAAAACAAATCTTGTTGGAGACGGATCTAACTCCGAACCACACGCTTCGACGATTGATCCAGGCATGGTGCACCCTCAATGCTCCGTATGGGATCGAACGCATTCCAACACCAAAGCCACCTGTCGACAAAGCCCAAATCATCAAACTTCTCAACAATGCTAAGACGCCGCAGTCGCAGCTGAAATCTCTTCGGAAGCTTCGATCTATCGCCTTCGAAAGTGATAGGAACAAGAGATGTATAGAGTCTTCTGGTGCAGTTGAGTTCTTAGCATCCATCATAAGGAATGACAACTCTACCCCGATAGAAGATACAACGGATGATGGAGTTGAGTTCGTAAGGACCAGCGATGAAGCACTAAGCCTTCTTTATAGTCTTCAAATCTCAGAAACAGGTCTAAGAAATCTCATCGGCAAAAATGGGGAGTTTGTTGAGTCCTTGATCGAAGTTTTGCGTCGTGGAAATTACCAATCTCGTGCTTATGCTGCGTTGCTCTTGAAACCCATGTTCGAGGTGGCTGATCCAATCCATTTGATCAGTTTGAGATCTGAATTGTTCGTTGGGATCGTTCAGGTTTTGCGAGATCAGATTTCGCACCAAGCTTTTAAAGCTGCATTGCAAATCCTTGTCGAGATTTGTCGATGGGGAAGAAACAGGATTAAAGCCGTAGAGGCTGGTGCTGTTTCGATTTTGATCGAGCTTCTTCTCGAGACGTCGGATAGGAGAGCTTGTGAGATGATTTTGGTGGTGTTAGATCAGCTATGCGGGTGTGCTGAAGGGCGAGGGGAGTTTTTAAAGCATGGAGCTGGTATCGCCGTTGTGTCGAAGAAGATACTTAGGGTTTCACAGGTAGCAAATGAAAGGGGAGTGAGAATACTCTCTTCAATTTCTAGGTTCTCTGCAACTTCAAGTGTTCTTCAGGAGATGTTGCAAGTTGGTGTTGTCTCCAAGTTGTGTTTGGTGCTTCAGGTGGAATGTAGCGCCAAGACTCATGAGAAGGCAAAGGATATCCTTAGGTTGCATTCTAGGGCTTGGAAGAACTCCTCTTGTATTCCTACCAATTTGCTCTCTTCATATCCCTGTTAA 1236 0.4506 MEEIDIPPYFLCPISLEILRDPVTVSTGITYDRENIEKWLFSGKNNTCPVTKQILLETDLTPNHTLRRLIQAWCTLNAPYGIERIPTPKPPVDKAQIIKLLNNAKTPQSQLKSLRKLRSIAFESDRNKRCIESSGAVEFLASIIRNDNSTPIEDTTDDGVEFVRTSDEALSLLYSLQISETGLRNLIGKNGEFVESLIEVLRRGNYQSRAYAALLLKPMFEVADPIHLISLRSELFVGIVQVLRDQISHQAFKAALQILVEICRWGRNRIKAVEAGAVSILIELLLETSDRRACEMILVVLDQLCGCAEGRGEFLKHGAGIAVVSKKILRVSQVANERGVRILSSISRFSATSSVLQEMLQVGVVSKLCLVLQVECSAKTHEKAKDILRLHSRAWKNSSCIPTNLLSSYPC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01013 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Eupl05g01013 411 Gene3D - 95 403 IPR011989 -
Eupl05g01013 411 CDD RING-Ubox_PUB 7 60 IPR045210 -
Eupl05g01013 411 PANTHER WDSAM1 PROTEIN 2 402 IPR045185 GO:0061630
Eupl05g01013 411 SUPERFAMILY ARM repeat 97 394 IPR016024 -
Eupl05g01013 411 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Eupl05g01013 411 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Eupl05g01013 411 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Eupl05g01013 411 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Eupl05g01013 411 SUPERFAMILY RING/U-box 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01013 Eupl-Chr5 31725098 31726744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01013 2 411 U-box Gene Family AT2G35930 58.413 4.99e-177 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01013 - - nnu:104590352 612.453