Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01012 ATGTTCATACACGGTGAAGATTTGCTTCCATGCCCTCCAATTAGGCCCATGGTGATGGATAGAAGATGGAAGCCTAACGTCGAATTAGCTCCGAATTGCCCCCGTTGCGATTCGTCCAACACCAAATTTTGCTACTACAACAACTACAGCTTAACACAGCCTCGTTACTTCTGCAAGGGCTGTAGAAGGTATTGGACCAAAGGCGGGTCCCTCCGTAACGTGCCCGTCGGTGGAGGTTGTCGGAAAAATCGTAGAGGGAAATCAGTACGGATATCAACCGATCGAGCCTCTACTGGGAGTTCGAATTATCGGAGTACATTACCGAGTATCGAATGTTCGGGGTTCCCCTCAGCTGACCCAATTGTGAATTCTTGTCGATGGGATGGAAATGTCATGGTTTCGAACACGAACCCACCGAGGTCCGATGCTTCAACTATTGACCTTGCACTTGTTTATGCGAAGTTCTTGAATCACCGGCCGCATTCCGATTCCGAGCTTGTAATGCCTGATTTGCCTAGGGAATTCGAGGCTCCTTTTGATTTGTCGAGTATTTCGGACCCGCCGAATCATGACCCAAATGTCCGATTCTCACAAGAACAATGTATTGTTGGATGCCATGGGACATCTGATCCGTCCCCAGTGACCCAATTGAGTGAGGGGCATCAAGTGTTTCTTGGTGAATTCGACTTGAATTATAAGCAACAAGAGAGAATTTCGCAATTTACAAGTTTGGACACAATCAATTATGGATTGCAAGTGTTGCCGGTGGAAGAGGTAGTCGTTCAAGACATGTTGTGGTCGAATTCTCCTGTGGTGGGCTCAAGTTTTACATGGCAAGCGACACAGTTGAAAGCGTTCGATCCGGTCCTGGCCGAAGATCATCAGTCTATCCTTCATTCAAACGCGTCAAACGGTAACTGGAGCTCGTTCGATCTGCCGAATTATGAAGCTTTTTCTAGGTCTTGA 966 0.4731 MFIHGEDLLPCPPIRPMVMDRRWKPNVELAPNCPRCDSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSVRISTDRASTGSSNYRSTLPSIECSGFPSADPIVNSCRWDGNVMVSNTNPPRSDASTIDLALVYAKFLNHRPHSDSELVMPDLPREFEAPFDLSSISDPPNHDPNVRFSQEQCIVGCHGTSDPSPVTQLSEGHQVFLGEFDLNYKQQERISQFTSLDTINYGLQVLPVEEVVVQDMLWSNSPVVGSSFTWQATQLKAFDPVLAEDHQSILHSNASNGNWSSFDLPNYEAFSRS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01012 321 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Eupl05g01012 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 204 IPR045174 GO:0003700|GO:0006355
Eupl05g01012 321 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Eupl05g01012 321 Pfam Dof domain, zinc finger 32 85 IPR003851 GO:0003677|GO:0006355
Eupl05g01012 321 MobiDBLite consensus disorder prediction 83 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01012 Eupl-Chr5 31712011 31713156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01012 23 312 C2C2-Dof Transcription Factor Family AT3G52440 36.755 1.38e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl05g01012 zf-Dof 8.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01012 - - nnu:104601506 389.423