Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g01002 ATGAACGATCTACTGTCCGGTTCTTTCTCTAAAGAAGATGGTGGCGGCGTCGGCGGCGGCGATGGTTTACAGATGGCCGCGATGGGGGAAAATTTAGATAAGTTCTTCAAAGAAATCGAAGGGATCAAAGAAGAGCTCAAAGAGGTGGAAAATTTATACCAGCGGCTCCAAAACTCCCATGAAGAAAGCAAAACCCTTCACAACGCCAAATCGATCAAAGACCTCCGATCCCAGATGGACGCAGATGTTGCACTTTCACTCAAGAAGGCAAAATTGATCAAAGTTCGTCTCGAATCCCTCGATCGAGCCAACGCTGCTAACCGCAGCGTCCCTGGGTGCGGTCCAGGCAGTTCTTCGGACCGAACCCGGACGTCTGTCGTCAACGGGCTTAGAAAAAAGCTTAAAGACTCCATGGAAAGCTTCAGTAGGCTTAGACAGCAAATTGGATCGGAATACAAAGAAACAGTTCAGCGTAGATACTTCACGGTGACTGGAGAGAAGCCGGATGATCGAACGGTCGAGATTTTAATATCGACAGGCGAGAGCGAGACGTTCTTGCAGAAGGCGATACAAGAACAAGGTCGAGGGAGAGTTCTAGATACCATTTCTGAGATACAGGAGAGGCATGATGCTGCTAAAGAAATGGAAAGGAGTTTGCAGGACTTGCACCAAGTGTTCCTCGATATGTCGGTTCTGGTGCAAGCTCAAGGGGAGCAGCTTGACGATATCGAGAGCCAGGTGATCCGGGCGAATTCTTTCGTCCGGGGTGGGACCCAACAGCTACAGAAGGCAAGGTGGTATCAGAAGAACAGTCGTAAGTGGACATGCTGCGCCATCCTCCTCCTCCTCATCATCATCTTGATCATCGTCCTCCCCTTAGTTCTTCGGAAGTAA 894 0.4955 MNDLLSGSFSKEDGGGVGGGDGLQMAAMGENLDKFFKEIEGIKEELKEVENLYQRLQNSHEESKTLHNAKSIKDLRSQMDADVALSLKKAKLIKVRLESLDRANAANRSVPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFSRLRQQIGSEYKETVQRRYFTVTGEKPDDRTVEILISTGESETFLQKAIQEQGRGRVLDTISEIQERHDAAKEMERSLQDLHQVFLDMSVLVQAQGEQLDDIESQVIRANSFVRGGTQQLQKARWYQKNSRKWTCCAILLLLIIILIIVLPLVLRK* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g01002 297 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Eupl05g01002 297 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Eupl05g01002 297 Coils Coil 32 66 - -
Eupl05g01002 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Eupl05g01002 297 Pfam SNARE domain 238 290 IPR000727 -
Eupl05g01002 297 CDD SynN 32 189 IPR006011 GO:0016020
Eupl05g01002 297 ProSitePatterns Syntaxin / epimorphin family signature. 208 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl05g01002 297 SMART tSNARE_6 197 264 IPR000727 -
Eupl05g01002 297 CDD SNARE_syntaxin1-like 201 263 - -
Eupl05g01002 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Eupl05g01002 297 FunFam Syntaxin 132 195 295 - -
Eupl05g01002 297 SMART SynN_4 27 153 IPR006011 GO:0016020
Eupl05g01002 297 Gene3D - 198 294 - -
Eupl05g01002 297 Gene3D - 29 162 - -
Eupl05g01002 297 PANTHER SYNTAXIN 43 286 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g01002 Eupl-Chr5 31524777 31526301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g01002 29 276 SNARE and Associated Proteins AT3G11820 75.403 3.90e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g01002 K08486 - zju:107433634 412.535