Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00999 ATGCAAACCGTGTGCTTTAAAGAATATGGAGGAATTGCCCATAATCCAATTGCTCAGTCATCTCCACTTCCTTCCATGCCATGGTGGAGTGCGGTCGGATCTCAACCGGCCTATGCTGAGTCATTTGGCCATCTAAAGTCTTTATGTGTGGACCACCCTAGTGGTGGAGACCCACTCACAGCAGCTCCTCGACGAGCACAGCGTGGAACAGACCAAGGACCAGAGAAATATAACTACAATACTTCTCAATTCGCTATCTTTCCTGGTGACAACAAGGACTCTGGGAAGGGGCAAAAAACTCACCAACTTCCGGCAAATATCCCTCAGCAGTCATCTCCACCTGAATACCAAGCTTGTTTCGAACTAGGACTTGGTCAACCTATGGTTTGTGCAAATTATCCCTACATCGATCAATGTTATGGCGTATTTGCAACTTATGGAGCGCAGACAACGGGCCGCATAATGTTGCCATTGAATGTGAAGACAGAAGATGGACCAATATATGTAAATGCTAAGCAGTACCATGGAATCATTCGTCGTCGACAGTCCCGTGCAAAGGCAGAGATGGAGAATAAACTGATCAAAGCTCGGAAGCCATATATGCATGAATCACGCCATCTCCATGCGATGCGTCGAGCAAGGGGATGCGGAGGCCGCTTCCTGACAAAGAACACAAATAGCGGAAAAGGTGGGTCTGACATAGACAATGCAGGGGACATACAACATTCTCAGCCCTCGGGGTCATCAAGTTCCGAAGTTCTGCAATCTGAGAGTGGAAATTTGAACTCTTCAAAGGAGGCATGTGGTGGCGGTTCGAGTCTATCATTGTCAGAAGTGACTAGCATGTACTCTAGGGGAGATCCCAACCGCTTTCAGATCAACCATCTCCATCCATCTGCTTTCCACTCTCTCTCCAACATGGATGGTGGGCAGGGCATGAGTGTTCCCAATAAGTGGGCTACAGCAGCCGATGGTTGCTGTGACCTCCTCAAAGTTTGA 999 0.4815 MQTVCFKEYGGIAHNPIAQSSPLPSMPWWSAVGSQPAYAESFGHLKSLCVDHPSGGDPLTAAPRRAQRGTDQGPEKYNYNTSQFAIFPGDNKDSGKGQKTHQLPANIPQQSSPPEYQACFELGLGQPMVCANYPYIDQCYGVFATYGAQTTGRIMLPLNVKTEDGPIYVNAKQYHGIIRRRQSRAKAEMENKLIKARKPYMHESRHLHAMRRARGCGGRFLTKNTNSGKGGSDIDNAGDIQHSQPSGSSSSEVLQSESGNLNSSKEACGGGSSLSLSEVTSMYSRGDPNRFQINHLHPSAFHSLSNMDGGQGMSVPNKWATAADGCCDLLKV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00999 332 Gene3D - 163 225 - -
Eupl05g00999 332 MobiDBLite consensus disorder prediction 220 272 - -
Eupl05g00999 332 MobiDBLite consensus disorder prediction 88 110 - -
Eupl05g00999 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 166 220 IPR001289 GO:0003700|GO:0006355
Eupl05g00999 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 72 284 IPR001289 GO:0003700|GO:0006355
Eupl05g00999 332 PRINTS CCAAT-binding transcription factor subunit B signature 197 220 IPR001289 GO:0003700|GO:0006355
Eupl05g00999 332 PRINTS CCAAT-binding transcription factor subunit B signature 166 188 IPR001289 GO:0003700|GO:0006355
Eupl05g00999 332 ProSiteProfiles NF-YA/HAP2 family profile. 163 223 IPR001289 GO:0003700|GO:0006355
Eupl05g00999 332 ProSitePatterns NF-YA/HAP2 subunit signature. 168 188 IPR018362 GO:0003677|GO:0016602
Eupl05g00999 332 MobiDBLite consensus disorder prediction 218 272 - -
Eupl05g00999 332 MobiDBLite consensus disorder prediction 56 75 - -
Eupl05g00999 332 SMART cbf3 162 223 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00999 Eupl-Chr5 31457524 31474031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00999 24 329 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.557 1.01e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Eupl05g00999 CBFB_NFYA 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00999 K08064 - nnu:104601425 457.603