Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00993 ATGCTTTCGGCTACTTACGGTGAATATAAGCCTAGAATCAATGCCCTTAGACATCATCGAAAGAACATGTGTCTCAACAACTACAAATCAGGTGATTGTGTCACCAATACCAACCTATCCATCCTCCCTCCCTCCCTCAATGAGATGAACAGCACTGTCGACTCTGGTGGGCAGCTCTCTGACAAGATCAGTGGGTTTGGCTATTTCATCGGGGTTGCAGTAGGTATCCTCCTCCTAATCACCACCATTGCGCTTGCCTCCTACTACTGCACCCGTGCTCGAGCCCACACGCAACTGGCCCCACGTCAAGAAAGCTCCAGTGAGTCGCCTGACAATCACTCCATCACTGTTGAGGTAGGCCTAGATGAGGCCACCCTCAAGAGCTACCCAAAGTTCCTCTATTCCCAGGCTAAGCTCCACAAGAAGGATACCACCAACTCCTGTTGCTCCATCTGCTTGAACGATTACAAGGACACCGATACACTCCGGCTGCTGCCTGATTGTGGGCACCTGTTCCATCTCCAGTGTGTTGACCCTTGGTTGCGGTTGCATCCCACCTGCCCTGTCTGTCGAACCTCTCCAGTCCCCACACCCCTCTCAACCCCTCTGGCAGAGGTGGTTCCCTTGGCAAGCCTGCAAGCATGA 645 0.5287 MLSATYGEYKPRINALRHHRKNMCLNNYKSGDCVTNTNLSILPPSLNEMNSTVDSGGQLSDKISGFGYFIGVAVGILLLITTIALASYYCTRARAHTQLAPRQESSSESPDNHSITVEVGLDEATLKSYPKFLYSQAKLHKKDTTNSCCSICLNDYKDTDTLRLLPDCGHLFHLQCVDPWLRLHPTCPVCRTSPVPTPLSTPLAEVVPLASLQA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00993 214 SUPERFAMILY RING/U-box 125 196 - -
Eupl05g00993 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 196 IPR013083 -
Eupl05g00993 214 SMART ring_2 149 190 IPR001841 -
Eupl05g00993 214 FunFam E3 ubiquitin-protein ligase ATL6 110 196 - -
Eupl05g00993 214 Pfam Ring finger domain 149 191 IPR001841 -
Eupl05g00993 214 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 49 205 IPR045899 -
Eupl05g00993 214 CDD RING-H2_EL5-like 148 191 - -
Eupl05g00993 214 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00993 Eupl-Chr5 31381738 31386419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00993 49 210 C3H Transcription Factor Family AT5G06490 49.474 2.00e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00993 - - rcu:8259773 224.172