Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00977 ATGTCGCTCGACGTCGCATCTGAACGTGTTTGCTATGTCCATTGCAACTACTGCAACACGGTTTTAGCGGTTAGCGTTCCATGCTCCAGTTTGTTCAATGTCGTGACGGTTAGATGTGGGCATTGTGCTAATTTGCTATCCGTCAATACTGGAGCTTTGCTGCAAACAATCCCTCTTCAAGATCTTCAGAATCACAAACTAAACTATGAAGATTCCAGTACGGATTGTGGTTCTTCTTCCAAATGCAACCAGGGATCCATGTTGGACTCTACAGAGAATGAAGAACCTCCTCGAGCGCTTCCTATACGCCCAGCCCCAGAGAAGAGGCATCGTGTTCCTTCCGCATATAACAGATTTATCAAGGAGGAGATCCAGAGGATAAAGGCTAGTAATCCCGACATTAGCCACAGGGAAGCTTTTAGTACTGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGACTAACTGTCGATGGCAACAAGCGAGTAAAGATTGATGAGGCTTTTGCTGGGGAAGGGATGCAAAAGACTCAAGGATTCTACTAA 552 0.4529 MSLDVASERVCYVHCNYCNTVLAVSVPCSSLFNVVTVRCGHCANLLSVNTGALLQTIPLQDLQNHKLNYEDSSTDCGSSSKCNQGSMLDSTENEEPPRALPIRPAPEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLTVDGNKRVKIDEAFAGEGMQKTQGFY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00977 183 CDD HMG-box_SF 111 147 - -
Eupl05g00977 183 Pfam YABBY protein 6 157 IPR006780 GO:0007275
Eupl05g00977 183 Gene3D High mobility group box domain 98 152 IPR036910 -
Eupl05g00977 183 PANTHER PROTEIN YABBY 6-RELATED 5 165 IPR006780 GO:0007275
Eupl05g00977 183 SUPERFAMILY HMG-box 104 150 IPR036910 -
Eupl05g00977 183 MobiDBLite consensus disorder prediction 74 108 - -
Eupl05g00977 183 MobiDBLite consensus disorder prediction 74 91 - -
Eupl05g00977 183 FunFam axial regulator YABBY 5-like 94 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00977 Eupl-Chr5 31211960 31218462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00977 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 62.632 3.12e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Eupl05g00977 YABBY 1.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00977 K25796 - nnu:104601443 304.293