Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00967 ATGTCGGATATCCGTAAGTGGTTTATGAAACAACATGACAAGAACAATGGGACAGCATCGAAGCCCGCAAAACCCACTGCGACCGTTCCGCCCCACGAGAAGCCTTCTCCAACGACCTCACAACCAGAGAAACCCATACATGGAGGTCAAGAAAGTTCAGGAAGGAGAAAAAGTAGCAAATATTTTGCTAATGATGCACAAAAGTCGAAAGATGAAAAGGAGACAGAGAAAACCCCAGCTAAAAGAAAAATCCAAAAAAGTAGGGAGGAAATAAACGATGATGTGAAACCCCCATCTGCAAAGAAACTTCACAAGGGTGATGACGATGACGATTTTGTGTTGCCCAGTGCAAGAAAAAACTCTGCTGAGGTCACTCCCACCAAGAAATTGAAGGGTGGGTTGGGTAAAGGAATTGTACAAAAATCTGTAGATACCAATGAAAAGGACGACGACAGTGTTGATGATAAAGAGGCTGGAACCCCTCTTAAAGGTGGTGGAAGGGGTGGTGGTGGAAGAGGTGGTGGTGGAAGAGGTTCAGCAGTCGCACCAGCTGGTGGAAGAGGGAGAGGTGGTGGGAGGGGTGGATTCATGTATGGCGAAAGGAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCCGAGGGTGCTCCTGATTGTTTAGCTAGTCTGACTTTTGTGATTAGTGGAACTCTTGACAGTTTGGAAAGGGAAGAAGCGGAAGATTTGATTAAACGCCACGGTGGTCGAGTGACTGGATCTGTCAGCAAGAAAACAAATTATCTTCTAGCTGATGAAGATATTGGAGGACGGAAATCCGAAAAAGCCAAAGAGCTGGGCACTGCCATGCTGACTGAGGACGGATTGTTTGATATGATTCGTAAATCAAAACCTACAAAAGCACCTCCACAAGAAGAATCAAAAAAGAAAATTGTGGATAAGGTTGTTGCATCGCAGCCAAAAGGAAGTCCTCTGAAAATAGAAGTGAAGGATGATCGAGGGGGCAAAACTTTGGTAAAATATGCTCCAAAAGGGTTGGCCTCAAGTGCCTCTCCTGCTAAGTGCAAAGACCAAACTACATGCCATGGTTCATTGACATGGACAGAAAAATATAAACCGAAGGTTCCAAACGACATCATTGGCAATCAGTCACTTATTAAACAACTTCACGAGTGGTTGGTGCATTGGAATGAACAATTTCTACATACCGGTCAGAAGGGAAAGGGAAAAAAGCAGAACGATAGTGGAGCTAAAAAGGCTGTACTGATAAGTGGGTCACCTGGTATTGGGAAGAGTACGTCAGCAAAGTTGGTTAGCCAGATGCTTGGGTTTCAAGCCATAGAGGTAAATGCTAGTGATAATCGTGGAAAAGCTGACGCCAAAATTTTTAAAGGAATTGGTGGAAGCACGGCAAATTCTGTAAAAGAACTTGTCAGCAACGAAGCTCTGAGTGTTAATATGGATCGGTCAAAGCATCCAAAAGCTGTGTTGATTATGGATGAGGTTGATGGCATGTCTGCTGGAGATAGAGGTGGTGTGGCTGACCTTATTGCTAGCATCAAGATCTCCAAAATTCCCATCATTTGTATTTGCAATGACCGCTACAGTCAGAAACTGAAAAGTCTCATCAACTATTGTTTGCTTCTCACCTTCCGGAAACCTACTAAACAACAGATGGCAAAGAGGTTAATGCAAGTTGCAAAAGCAGAAGGCCTTCAAGTTAATGAGATTGCACTCGAGGAACTTGCAGAGAGAGTTAATGGAGATATGCGTATGGCACTAAATCAGTTGCAGTATATGAGCTTCTCAATGTCAATTATCAACTATGATGACATAAGACAGCGCCTTCTTACTAGTGCAAAGGATGAAGATATTTCACCTTTTACAGCTGTTGATAAGCTATTTGGTTTTAATGGAGGGAAGTTGCGAATGGATGAGAGGATTGACTTGAGCATGAGTGACCCTGATCTAGTCCCCCTTCTCATTCAGGAAAATTACCTCAACTATCGACCAAGTTCTGTTGGTAAGGATGACAATGGAATCAAAAGAATGAACATGATTGCCCGTGCTGCAGAGTCTATTGGAAATGGAGATATCATCAATGTACAGATTCGGAGATATCGACAATGGCAACTCTCCCAAACCAGTTCCCTTGCATCTTGTATAATTCCTGCCGCTTTGTTGCATGGGCAAAGGGAGATCCTTGAACAGGGAGAGCGTAATTTTAATAGATTTGGTGGGTGGCTGGGAAAGAACTCAACAATGGGCAAGAATTTGAGGCTTTTGGAGGATATGCATGTACATCTGCTTGCTTCTCGTGAATCCAATTCAGACAGGGAGTCCTTGCGAGTTGATTATTTCTCTCTTATTCTGAAACGATTAACCGATCCACTTCGGGTGCTGCCCAAGGATGAAGCAGTTCTGAAGGTTGTCGAGTTCATGGATGCCTACTCTATAAGTCAGGAAGACTTTGACGCAATTGTGGAATTATCAAAGTTCCGGGGGCACCCAAATCCACTAGATGGCATACAGCCAGCTGTCAAAGCTGCACTGACAAAGGCATACAAGCAAGGAAGCAGCTCGCGTGTGGTACGAGCAGCAGATTTGATCACGCTTCCTGGAATGAAAAAGGCTCCGAAGAAACGGATAGCAGCAATTTTGGAGCCAGTGGACGATGGCTTGGTGGAGGAGAATGGTGATGCATTAGCAGAAAGTGAGGAAGAAAACTCTTCGGACGTGGAAGAAACAGATGGCAGCGATAATGTTGAGAAAAAGCTGCAGCTGGATCTCCAGAGTGGTAGCTCAAAAGGAATTCAAGTACAGCTGGACTTGAAGAACACGGGTAATTCAAGTGCGAGAAAGACACCAGCTAGTAAATCAAAACGAGGTTCTGAATCTGTAGAGAAGAAAGGTGGCCGAGGTTCGGGGGGCGCTCCCAAGAGAAAGAGATGA 2949 0.4439 MSDIRKWFMKQHDKNNGTASKPAKPTATVPPHEKPSPTTSQPEKPIHGGQESSGRRKSSKYFANDAQKSKDEKETEKTPAKRKIQKSREEINDDVKPPSAKKLHKGDDDDDFVLPSARKNSAEVTPTKKLKGGLGKGIVQKSVDTNEKDDDSVDDKEAGTPLKGGGRGGGGRGGGGRGSAVAPAGGRGRGGGRGGFMYGERKDPPHKGEKEVPEGAPDCLASLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLADEDIGGRKSEKAKELGTAMLTEDGLFDMIRKSKPTKAPPQEESKKKIVDKVVASQPKGSPLKIEVKDDRGGKTLVKYAPKGLASSASPAKCKDQTTCHGSLTWTEKYKPKVPNDIIGNQSLIKQLHEWLVHWNEQFLHTGQKGKGKKQNDSGAKKAVLISGSPGIGKSTSAKLVSQMLGFQAIEVNASDNRGKADAKIFKGIGGSTANSVKELVSNEALSVNMDRSKHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLINYCLLLTFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMSFSMSIINYDDIRQRLLTSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPSSVGKDDNGIKRMNMIARAAESIGNGDIINVQIRRYRQWQLSQTSSLASCIIPAALLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLEDMHVHLLASRESNSDRESLRVDYFSLILKRLTDPLRVLPKDEAVLKVVEFMDAYSISQEDFDAIVELSKFRGHPNPLDGIQPAVKAALTKAYKQGSSSRVVRAADLITLPGMKKAPKKRIAAILEPVDDGLVEENGDALAESEEENSSDVEETDGSDNVEKKLQLDLQSGSSKGIQVQLDLKNTGNSSARKTPASKSKRGSESVEKKGGRGSGGAPKRKR* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00967 982 MobiDBLite consensus disorder prediction 142 161 - -
Eupl05g00967 982 Gene3D BRCT domain 196 295 IPR036420 -
Eupl05g00967 982 MobiDBLite consensus disorder prediction 61 116 - -
Eupl05g00967 982 SUPERFAMILY post-AAA+ oligomerization domain-like 624 769 IPR008921 GO:0003677|GO:0006260
Eupl05g00967 982 Pfam Replication factor RFC1 C terminal domain 693 856 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Eupl05g00967 982 Pfam BRCA1 C Terminus (BRCT) domain 218 292 IPR001357 -
Eupl05g00967 982 FunFam Replication factor C subunit 1 364 552 - -
Eupl05g00967 982 Pfam ATPase family associated with various cellular activities (AAA) 420 531 IPR003959 GO:0005524|GO:0016887
Eupl05g00967 982 Gene3D - 553 623 - -
Eupl05g00967 982 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 961 - -
Eupl05g00967 982 MobiDBLite consensus disorder prediction 1 215 - -
Eupl05g00967 982 CDD BRCT_RFC1 215 293 - -
Eupl05g00967 982 MobiDBLite consensus disorder prediction 899 915 - -
Eupl05g00967 982 SUPERFAMILY BRCT domain 215 296 IPR036420 -
Eupl05g00967 982 MobiDBLite consensus disorder prediction 924 956 - -
Eupl05g00967 982 FunFam Replication factor C subunit 1 193 294 - -
Eupl05g00967 982 CDD AAA 413 516 - -
Eupl05g00967 982 SMART BRCT_7 217 295 IPR001357 -
Eupl05g00967 982 Gene3D - 625 734 - -
Eupl05g00967 982 PIRSF RFC1 1 957 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Eupl05g00967 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 613 IPR027417 -
Eupl05g00967 982 Gene3D - 364 552 IPR027417 -
Eupl05g00967 982 MobiDBLite consensus disorder prediction 199 214 - -
Eupl05g00967 982 FunFam Replication factor C subunit 1 625 734 - -
Eupl05g00967 982 ProSiteProfiles BRCT domain profile. 215 296 IPR001357 -
Eupl05g00967 982 SMART AAA_5 416 554 IPR003593 GO:0016887
Eupl05g00967 982 MobiDBLite consensus disorder prediction 899 982 - -
Eupl05g00967 982 FunFam Replication factor C subunit 1 553 624 - -
Eupl05g00967 982 CDD HLD_clamp_RFC 553 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00967 Eupl-Chr5 31055678 31078144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00967 1 936 Core DNA Replication Machinery Family AT5G22010 66.347 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00967 K10754 - nnu:104590928 1461.43