Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00965 ATGGAGGTTTCAGAGATGGATGAGACCAGTAAGACCGAGAGCCATCTGACATCAGCTGCTGCTTTTGTGGAGGGAGGAATACAAGAAGCCTGTGACGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGATAGCGATCCTTCGACGGTGACTAGTTGCAAGCACGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAAGCCCTCAGCCTGAAGGATCCCTTGAGCCAGGAACTGCTTGAGGCAGTAGAACGGGAGAGGAGCTTTAGGTTTAATCCATCACGAAATACTACAATATTTCATCATCCCACCCTGGGGGATTTTGAATTACAGCATTTACCAGTAGGTGCAAATGATGCTGAACTTGAAGAGCGTATAATCCAGCACTTGGCTGCTGCTGCTGCAATGGGAAGAGCACATCACATTGCTAGGAGAGAGGGCCAACGGAGTAGGTCAACAGCTCAGGGTCGTCCACAGTTCTTAGTGTTCTCCACTCATCCTAATGCATCTCCTGCCAGTCCTGTGTCTGCTCCAGCTCAGAGAGGAGAGGAAAATGAACCTTCTCCTGCAACCAGTGCAGCTAGTCTACCTGTCCCTCTTACAGCTGTGGGGGAAGAATCCTCACAACGGATCCCACGGGTACCTTTTGCCCAGACTGATCAGATTCCTGCCTCAGCCTCTGGATCTAGTGTTCTTGCTGCGAATCGACATGGGCTTTCATTTAATAATCGGAACTCTGCTAGTCAATCTTCCCCAGTAAATCCAGATAGAGCAGGACCGTCAGAATTCCAGTCGTTTTCAGATTCTTTAAAATCTCGATTTAATTCAGTCTCAATGAGATACAAAGAATCGATTACAAAGAGTACAAGAGGATGGAAGGAGAGGCTATTCTCTCGAAACACTTCCATGGCTGATCTTGGTTCAGAAGTAAGGAGAGAGGTAAACGCTGGAATTGCTAGTGTATCACGCCTGATGGAGCGCCTTGAAACCAGAGAAAATAGTGAACCCACTGATGCTTCTGTTTCAAATAACTTGGAGGATCATTCAGTTACAGAGCCAGGTAACCAGAGGATTGCAGAGACTCACGGTAACAATCCTTTGAATGATAACAATACATCAGCTTCTTGTGCTGCAAGTTCCGGCTCAAATTAA 1182 0.4721 MEVSEMDETSKTESHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQALSLKDPLSQELLEAVERERSFRFNPSRNTTIFHHPTLGDFELQHLPVGANDAELEERIIQHLAAAAAMGRAHHIARREGQRSRSTAQGRPQFLVFSTHPNASPASPVSAPAQRGEENEPSPATSAASLPVPLTAVGEESSQRIPRVPFAQTDQIPASASGSSVLAANRHGLSFNNRNSASQSSPVNPDRAGPSEFQSFSDSLKSRFNSVSMRYKESITKSTRGWKERLFSRNTSMADLGSEVRREVNAGIASVSRLMERLETRENSEPTDASVSNNLEDHSVTEPGNQRIAETHGNNPLNDNNTSASCAASSGSN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00965 393 CDD RING-H2_RHF2A 22 84 - -
Eupl05g00965 393 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Eupl05g00965 393 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 84 - -
Eupl05g00965 393 MobiDBLite consensus disorder prediction 345 393 - -
Eupl05g00965 393 MobiDBLite consensus disorder prediction 338 393 - -
Eupl05g00965 393 MobiDBLite consensus disorder prediction 173 276 - -
Eupl05g00965 393 SUPERFAMILY RING/U-box 27 82 - -
Eupl05g00965 393 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Eupl05g00965 393 Pfam Ring finger domain 34 75 IPR001841 -
Eupl05g00965 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 83 IPR013083 -
Eupl05g00965 393 SMART ring_2 35 75 IPR001841 -
Eupl05g00965 393 MobiDBLite consensus disorder prediction 222 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00965 Eupl-Chr5 31025389 31042726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00965 32 83 C3H Transcription Factor Family AT5G15790 42.308 3.05e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00965 K19043 - nnu:104601458 580.096