Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00963 ATGTGGGAAAAGAGAGAGACAAGAGCAAGCGAAGCTTCTGTCATTCCATCGGCACATATGGACAAGTTTGGTTCATTAGTGAAGGATGCCGAGTCTACCCCTGTACAGTCAAATGAGCAGGCTCACCTACTGGTTAAAGTCACCCATGAAAGAAAGCCTGCTGCACTTGCAGACAAGGATATAGACAGAATAATGGAATGCCCTGTGTGTAGTAAATCTATGTATCCACCTATTCAGCAGTGTCCTAGTGGGCATACCCTATGTTCAGATTGCAAATCTAAACTCAACAAGTGCCCGGTCTGCAAAAAGGAAATTGGAAATATAAGATGTCTGGTGCTTGAAAATTTTGCACTTTCCTTCCTCCTTCCATGCACATACCACTGTCTTGGTTGCGATGAGATGCTTCCTTATTACAGCAAGGTAAAGCATGAGGCTCAGTGCATCTTCAGGCCCTACAACTGCCCCCATCCTGGCTCGGATTGCTCAGTCACAGGGGATGTGCCATCTTTGTTGGCCCATCTGAGGGATAGTCACAAGGTGGATCTTCAGACAGGGTCCACTTTCAATCACCGTTATGTCAAACAGGATCCATTTTCGGTTGACAATGTGTCTTGGACACTCACTCTTTTTAATTGCTTTGATCACTACTTCTGCCTCCACTTTGAATCATTTCGCTTGGGAACTGAGCCAGTTTACATGGCTTTCCTGCGTTTCATGGGTGAAGAATCAGATGCGAGAAAGTTTGGATACTGCCTAGAGGTCGGTGACAACAGTCGGAAGCTGATGTGGCAAGGTGTGCCTCGGAGTATCCGTACTTGCCACCGGAGCGTCCGAGATAGTCATGACGGGCTCATAATTCAGAGGAGCTTGGCCCTATATTTCTCAAAAGGTGATAGGAGGGAGCTGAAGCTGAGGGTCACTGGCAGGATATGGAAGGAACTCTGA 945 0.4698 MWEKRETRASEASVIPSAHMDKFGSLVKDAESTPVQSNEQAHLLVKVTHERKPAALADKDIDRIMECPVCSKSMYPPIQQCPSGHTLCSDCKSKLNKCPVCKKEIGNIRCLVLENFALSFLLPCTYHCLGCDEMLPYYSKVKHEAQCIFRPYNCPHPGSDCSVTGDVPSLLAHLRDSHKVDLQTGSTFNHRYVKQDPFSVDNVSWTLTLFNCFDHYFCLHFESFRLGTEPVYMAFLRFMGEESDARKFGYCLEVGDNSRKLMWQGVPRSIRTCHRSVRDSHDGLIIQRSLALYFSKGDRRELKLRVTGRIWKEL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00963 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 190 307 IPR008974 GO:0005515
Eupl05g00963 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 120 IPR013083 -
Eupl05g00963 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 174 IPR013083 -
Eupl05g00963 314 SUPERFAMILY TRAF domain-like 121 311 - -
Eupl05g00963 314 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Eupl05g00963 314 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Eupl05g00963 314 SUPERFAMILY RING/U-box 59 106 - -
Eupl05g00963 314 FunFam E3 ubiquitin-protein ligase SINAT3 116 174 - -
Eupl05g00963 314 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Eupl05g00963 314 ProSiteProfiles Zinc finger RING-type profile. 67 102 IPR001841 -
Eupl05g00963 314 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00963 Eupl-Chr5 30978073 30984723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00963 20 313 C3H Transcription Factor Family AT2G41980 57.566 2.45e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00963 K04506 - msin:131232479 522.316