Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00962 ATGTCATGTTACTTGAAAACAAAACAATATGATGAGTGCATAAAGGAAGGCTCAGAGGTCTTGGCGTATGATGCAGAGAATGTCAAAGCTTTATATCGGAGGGGTCAAGCATATAAAGAATTAGGACTCTTAGAAGATGCGGTCTCTGACTTGAGTAAGGCACATGCGGTTGCTCCTGATGATGAAACTATTGCAGATGTCTTAAGGGATGCTAATGGAAGATTATCGGAAGAAGGTGGAGAGTGGGGTGCGTCAAGACGATTGGTAATCGAAGAAATAAGTGAAGAAGAGATCCAGACTTTGCCACCTGAGAGCTGTAAAAGTTCCCCGTCTATGGTATATTCTGTGACACAATCACAGGAAGCCAGCAAATGCTCTCAGAATGAAACCAGGTCCAACATTGGGGGTCCGACTACTGATCCTGAGTATCTGCAGGGCTTGAAAGACAACCCAGAAGCCATCAGGTCATTCCAAAATTTCATTTCAAATGCTGATCCTGACACTCTGTCTTCTTTGAGTGCTGGAAGTACTGAAGGAGTGTCGCCCGACATGATTAAGACCGCCTCGAATATGATCGGCCAGATGTCACCGGAAGAACTCCAGAAAATGATCCAGATGGCTTCCTCTTTTCAAGGGTTATCAGGGACTGTAGAAGCTAATAGCCACAGCTCAAGAAGTGGATCGCTGCCACAGGGTGTGTCACCCGACATGCTTAAGACTGCATCAGACATGATGAGCAAGATGTCTCCAGAAGAAATTCAAAAAATGTTTGAAGTCTCTTCCACTTTCAAAGGGAAAGACTTAGTTTCAAAAGCAACAACAATGAATACAAATGGCCCAAGGTCAAATAATGGGTCGACACTCTCAGATGGTGCTGGAATTCCTGCAGTAAACAGGAATTCTGATGTAGGTGAAAGTAGTTCATCTCGTGGGTTGTTCTCAAATTTGAGATCAGATCCATCTCCTCCCTCAAACTTCCCAACCTCAACGGCAGATTTGCAAGAGCAGATGCGAAACCAAATGAAAGATCCGGCGATGCGACAGATGTTAACATCCATGATTAAGAATATGAGCCCAGACATGATGGCAAACATGAGTGAACAATTTGGAGTCAAGCTCTCAAGAGCAGAAGCGGAAAAAGCTCAGCAAGCCATGTCCTCTCTATCAGCGGATAACTTGGATAGAATGATGCTGTGGGCAGATAGGATACAAAAGGGAGTAGAAGGTGCCAAAAAGACAAAGAACTGGCTCTTGGGGAGACCTGGTATGATTCTCGCGATATGCATGCTCATTTTAGCCATCATCCTTCACCGGCTGGGTTACATTGGTGGTTAA 1335 0.4457 MSCYLKTKQYDECIKEGSEVLAYDAENVKALYRRGQAYKELGLLEDAVSDLSKAHAVAPDDETIADVLRDANGRLSEEGGEWGASRRLVIEEISEEEIQTLPPESCKSSPSMVYSVTQSQEASKCSQNETRSNIGGPTTDPEYLQGLKDNPEAIRSFQNFISNADPDTLSSLSAGSTEGVSPDMIKTASNMIGQMSPEELQKMIQMASSFQGLSGTVEANSHSSRSGSLPQGVSPDMLKTASDMMSKMSPEEIQKMFEVSSTFKGKDLVSKATTMNTNGPRSNNGSTLSDGAGIPAVNRNSDVGESSSSRGLFSNLRSDPSPPSNFPTSTADLQEQMRNQMKDPAMRQMLTSMIKNMSPDMMANMSEQFGVKLSRAEAEKAQQAMSSLSADNLDRMMLWADRIQKGVEGAKKTKNWLLGRPGMILAICMLILAIILHRLGYIGG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00962 444 Gene3D Tetratricopeptide repeat domain 1 81 IPR011990 GO:0005515
Eupl05g00962 444 MobiDBLite consensus disorder prediction 120 139 - -
Eupl05g00962 444 SMART tpr_5 28 61 IPR019734 GO:0005515
Eupl05g00962 444 MobiDBLite consensus disorder prediction 272 330 - -
Eupl05g00962 444 Coils Coil 371 391 - -
Eupl05g00962 444 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 232 443 - -
Eupl05g00962 444 ProSiteProfiles TPR repeat profile. 28 61 IPR019734 GO:0005515
Eupl05g00962 444 MobiDBLite consensus disorder prediction 120 143 - -
Eupl05g00962 444 SUPERFAMILY TPR-like 3 68 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00962 Eupl-Chr5 30970245 30975291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00962 2 64 Calmodulin-binding Proteins AT5G48570 42.857 8.46e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00962 - - tss:122643419 590.497