Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00953 ATGCTAAGCTGCAAGAAGAGCTTATTATCTCAAATCTTCAGGAAGAAAAAGAGAAAGAAAAACAAAAGGAAGAAAATCAGAAATCAAAGCCCACATTTTCAGAAACAAGAATCAGAAGAAGAAGAGGAAGAGAGAGAAGGAGGTTTCAGCTTAAAAAGCTCTGCTTCTTCACACACCCATGGCGTCCAACCTCTAGGAAATCTCCTCCTCAACGCCTCCTCCTGTAACTCCAGAAACACAGGTCTAGGTAATCTCTGTATTCTCTCTGATGAACTCGTTCTTGACGTTTTAGGGTTTCTGGGTGGTACCCATTTGGGTGTTTTAGCTACAGTGAGCAAATCTTTCTATGTTTTCTGCAACCATGAGCCTATTTGGAGGAATCTCGTGTTGGAAAACCTCAAAGGGGTTTTTTTATTTAATGGGTCTTGGAAATCTACTTACGTTTCAGCTTACAAACCTTCGTTCGCTATGTCGAATCTCGGTTCTTCGGGTTTGAAAGTTAGGGACTTTTATTCGGATTATCTCTTCCAGAGTTGGCTCTGTGCAAGCCTTGAAATGAAACACGAATGGCTTGGAAGGGATAATATCGAGCGGAGGAGTGGAATTTCGGTTGAGGAGTTTGTATTGAATTTCGAAGAACCGAATAAGCCGGTGTTATTGGAAGGGTGTCTGGAGAATTGGTCTGCTTTGGAAAAATGGGACAGGAATTATCTGATTCGGGTTTGCAGGGATGTTGAGTTTTCGATTGGGCCGGTGGAGATGAAGCTCGAGGACTATTTTAGATATTCAGATGGGGCAAGAGAGGAACGGCCATTGTATCTCTTTGACCCGAAGTTTGCGGAGAAAGTTCCTGAATTGGGTTCTGATTATGAGGTTCCTGTTTACTTTAGAGAGGATTTATTTGCTGTTTTGGGCAATGAGAGACCAGATTACAGATGGGTTATTATTGGACCAGCAGGATCAGGTTCTTCATTCCACATCGATCCGAATTCCACTTCGGCTTGGAATGCGGTTATCAAGGGCTCCAAGAAATGGGTCTTGTTTCCACCTGACACGGTTCCACCAGGAGTCCATCCTAGCCCAGATGGTGCTGAGGTGGCGTGCCCCGTTTCAATAATTGAGTGGTTTATGAACTTCTACGGAGCAACTAAGAAGTGGAAGAAGAGGCCTGTGGAGTGTGTGTGTAAGGCTGGGGAGGTGATATTCGTGCCCAATGGATGGTGGCATCTTGTTATCAACCTTGAGGAGTCCATTGCCATTACTCAGAATTATGTCAGCAGGAGGAATTTATTGAATGTTTTAGATTTTCTGAAGAGACCGAATGCAAGCGAACTCGTCTCAGGAACAAGAGACAGGGTGAATTTGTACGACAAGTTTAGGAGTGCTATTGAAGCCTCTTTCCCTGGAACTATCGATCAGCTGTTGTTGAAAGCCGAAGAGAAGAAGGCTCAACAGAAAAAACCAACCTTCTGGGAATCTGTAACAGATGCCAAAGTGGGAGCATTCAAGTTTTCTTTCTGA 1521 0.4379 MLSCKKSLLSQIFRKKKRKKNKRKKIRNQSPHFQKQESEEEEEEREGGFSLKSSASSHTHGVQPLGNLLLNASSCNSRNTGLGNLCILSDELVLDVLGFLGGTHLGVLATVSKSFYVFCNHEPIWRNLVLENLKGVFLFNGSWKSTYVSAYKPSFAMSNLGSSGLKVRDFYSDYLFQSWLCASLEMKHEWLGRDNIERRSGISVEEFVLNFEEPNKPVLLEGCLENWSALEKWDRNYLIRVCRDVEFSIGPVEMKLEDYFRYSDGAREERPLYLFDPKFAEKVPELGSDYEVPVYFREDLFAVLGNERPDYRWVIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPDTVPPGVHPSPDGAEVACPVSIIEWFMNFYGATKKWKKRPVECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASELVSGTRDRVNLYDKFRSAIEASFPGTIDQLLLKAEEKKAQQKKPTFWESVTDAKVGAFKFSF* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00953 506 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 82 504 - -
Eupl05g00953 506 Coils Coil 9 29 - -
Eupl05g00953 506 Gene3D - 77 155 - -
Eupl05g00953 506 Pfam Cupin-like domain 206 424 IPR041667 -
Eupl05g00953 506 ProSiteProfiles JmjC domain profile. 281 441 IPR003347 -
Eupl05g00953 506 SMART cupin_9 272 441 IPR003347 -
Eupl05g00953 506 MobiDBLite consensus disorder prediction 30 49 - -
Eupl05g00953 506 FunFam F-box protein At1g78280 176 426 - -
Eupl05g00953 506 MobiDBLite consensus disorder prediction 15 29 - -
Eupl05g00953 506 Gene3D Cupin 175 426 - -
Eupl05g00953 506 MobiDBLite consensus disorder prediction 15 58 - -
Eupl05g00953 506 SUPERFAMILY Clavaminate synthase-like 194 439 - -
Eupl05g00953 506 SUPERFAMILY F-box domain 79 150 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00953 Eupl-Chr5 30891897 30897101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00953 76 430 Glycosyltransferase AT1G78280 37.534 4.82e-76 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Eupl05g00953 Cupin_8 2.7e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00953 - - tss:122653012 872.463