Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00933 ATGAACGACCTTCTAACGGATTCCTTTGAGATCCCTCGAGGTCAAGCTTCAAGGGGTGGAGATATTGAATTAGGAACAAATGCTCCAATGAATTCTGGGGACCTGGGCTTAGACAAATTTTTCAAACAGGTTGAAGAGATTGAAAAACAAATTGAAAAGCTTAATAAACTACTGAAAAAGCTCCAGGATGCAAATGAGGAGTCGAAATCTGTAACCAAGGCTGCTGCCATGAAAGCAATCAAGCAGCGTATGGAGAAAGATGTGGATGAAGTAGGAAAAATTGCTCTTTCCGCAAAAACAAAAGTTGAACAACTCGACAGAGAGAATTTAACCAATAGGCAAAAGCCTGGATGTGGAAAAGGAACAGGTGTAGACCGCACAAGAACAGCACGAACTGTTGCCTTGAAAAAGAAGCTGAAAGAAAAGATGTCTGAATTTCAGACCCTAAGGGAAACCATCCATCAAGAGTATCGGGAGGTTGTTGAGAGAAGGGTTTTTACAGTAACGGGTACAAGAGCTGACGAAGAGACAATCGACCAATTAATAGAGACCGGAGATAGTGAGCAAATATTCCAGAAAGCAATTCAAGAACAAGGCCGAGGCCAGATAATGGACACACTGGCAGAAATTCAAGAACGTCATGATGCAGTTAGAGAAGTAGAGAAGAAGCTTCTCGAGTTGCAGCAGATATTCATGGACATGGCGGTGTTGGTAGAAGCACAAGGCGACATGCTGGACAACATTGAGTCACAGGTTTCAAGTGCAGTCGACCACGTGCAATCGGGGACTACTGCCCTCCAAAAAGCAAAGAAGCTACAGAAAAACTCCCGCAAATGGATGTGCATAGCCATCCTCATCCTTCTCATAATTGTGGTCATCATCATTGTGGCCGTGCTCAAGCCATGGGAAAGTAACAAGGGTGCTTAG 927 0.438 MNDLLTDSFEIPRGQASRGGDIELGTNAPMNSGDLGLDKFFKQVEEIEKQIEKLNKLLKKLQDANEESKSVTKAAAMKAIKQRMEKDVDEVGKIALSAKTKVEQLDRENLTNRQKPGCGKGTGVDRTRTARTVALKKKLKEKMSEFQTLRETIHQEYREVVERRVFTVTGTRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVREVEKKLLELQQIFMDMAVLVEAQGDMLDNIESQVSSAVDHVQSGTTALQKAKKLQKNSRKWMCIAILILLIIVVIIIVAVLKPWESNKGA* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00933 308 FunFam Syntaxin 132 32 161 - -
Eupl05g00933 308 SMART tSNARE_6 202 269 IPR000727 -
Eupl05g00933 308 Coils Coil 37 74 - -
Eupl05g00933 308 FunFam Syntaxin 132 200 300 - -
Eupl05g00933 308 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Eupl05g00933 308 Pfam SNARE domain 243 295 IPR000727 -
Eupl05g00933 308 CDD SNARE_syntaxin1-like 206 268 - -
Eupl05g00933 308 Gene3D - 34 161 - -
Eupl05g00933 308 Coils Coil 136 156 - -
Eupl05g00933 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Eupl05g00933 308 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Eupl05g00933 308 Gene3D - 197 300 - -
Eupl05g00933 308 PANTHER SYNTAXIN 32 291 IPR045242 -
Eupl05g00933 308 MobiDBLite consensus disorder prediction 1 21 - -
Eupl05g00933 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl05g00933 308 CDD SynN 37 194 IPR006011 GO:0016020
Eupl05g00933 308 SMART SynN_4 32 158 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00933 Eupl-Chr5 30612192 30625579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00933 1 308 SNARE and Associated Proteins AT3G03800 74.026 1.14e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00933 K08486 - psom:113323294 495.352