Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00920 ATGAACAGAGGGACTAGTTCTGGGAGTAATTCTGTTCGATCCAAACACAGTACTCGTTTGGTTGCTAAGACCACCGCTGATGCGAAGCTTCATGTAGACTTTGAGGAGTCCAAACAGTTGTTCGATTACTCAACTTCAGTTGATTTCAACGTCTCAAGTGCTGACAGCAATGTCCCCTCTTCCTCAGTGTCAGAATACCTCCAGCGGATGCAGAGGGGAAAGCTCATCCAACCCTTTGGCTGTACAATTGCCGTCAAAGAACAGACCTTTGCTGCTCTCGCCTACAGCGAGAATGCCCCTAAGATGTTGGACTTAGCCCCACAAACAGTTCCCAGCATCGAACAACAAGAAGCTCTGACGATCGGAATGGATGTTCGGACCCTCTTCCGGTCCTCAAGCGCCGTGGCCTTGCAGAAAGCTGCCAATTTTGGAGAAGTTAATCTCCTCAATCCAATATTGGTACACTGTAAGAACTCAGGTAAGCCCTTTTACGCGATTATACACCGGATTGATGTGGGGTTGGTTATAGATTTGGAGCCAGTGAGTCCTGCTGAGGTGCCAGTAGCTGCTGCCGGGATATTGAAATCATATAAGCTCTCAGCCAAAGCTATCTCCAGATTGCAATCTTTGCCAAGTGGAAATATCTCACTGTTGTGTGATGTATTGGTTCAGGAAGTTAGCGATCTAACAGGTTATGATAGGGTGATGGTGTATAAGTTTCATGAAGATTAA 732 0.4645 MNRGTSSGSNSVRSKHSTRLVAKTTADAKLHVDFEESKQLFDYSTSVDFNVSSADSNVPSSSVSEYLQRMQRGKLIQPFGCTIAVKEQTFAALAYSENAPKMLDLAPQTVPSIEQQEALTIGMDVRTLFRSSSAVALQKAANFGEVNLLNPILVHCKNSGKPFYAIIHRIDVGLVIDLEPVSPAEVPVAAAGILKSYKLSAKAISRLQSLPSGNISLLCDVLVQEVSDLTGYDRVMVYKFHED* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00920 243 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 182 IPR035965 -
Eupl05g00920 243 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 214 243 IPR016132 -
Eupl05g00920 243 SUPERFAMILY GAF domain-like 194 243 - -
Eupl05g00920 243 Gene3D - 195 243 IPR029016 -
Eupl05g00920 243 Pfam PAS fold 66 181 IPR013654 GO:0006355
Eupl05g00920 243 PRINTS Phytochrome signature 129 151 IPR001294 GO:0006355|GO:0009584
Eupl05g00920 243 PRINTS Phytochrome signature 229 243 IPR001294 GO:0006355|GO:0009584
Eupl05g00920 243 PANTHER OS08G0260000 PROTEIN 62 224 - -
Eupl05g00920 243 Gene3D PAS domain 72 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00920 Eupl-Chr5 30469748 30470479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00920 6 243 Histidine Kinase Gene Family AT5G35840 63.445 2.55e-105 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00920 - - msin:131229686 376.326