Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00919 ATGAAGAACAAGGTCAGGATGATTTGCGACTGTTCTGCCCGTGCGGTTAAAGTAATCCAAGACAAGAGCCTGGCACAGCCTTTGAGTCTTTGTGGGTCTACACTGAGAGCTCCTCATGGGTGTCATGCGCAATACATGGCAAATATGGGTTCCATAGCGTCACTTGTGATGTCTGTGACAATCGACAAGAATGATGATGAGATTCAAACTGACCAGCAAAAGGGAAGGGTGCTGTGGGGGTTGGTTGTCTGCCATCACACAAGCCCTAGGTTTGTTCCATATCCTCTGAGGCATGCCTGTGAGTTCTTGATTCAAGTCCTTGGTATACAGCTTAACAAGGAAGTGGAGTTGGCGACTCAATTGAGGGAGAAGCATATTCTGCAAACGCAGACTGTGCTTTGTGACATGCTCCTTAGGGATGCTCCAGTGGGGATTGTTACTCAATCACCAAATGTGATGGACCTTGTTAAGTGTGATGGTGCTGCACTGTATTACAAGAATCAATTTTGGCTGCTTGGGTTAACCCCTACAGAGGCACAAATAAGAGATATAGCTGGATGGATTCTTGAGCACCATGATGGGAGTACAGGTGTAAGTATAGATAGCCTCATGGAAGCTGGCTATCCAGGTTCTTCAGTTCTTGGGGATGTAGTTAGTGGAATGGCTGCCATTAAGATTACTTCAAAGGACTTCCTCTTTTGGTTCCGATCCCATACAGCAAAAGAGATCAAGTGGGGTGGTGCAAAACATGACCATGTCGATAAGGATGACGGCAGGAAGATGCACCCTCGATCGTCATTCAAGGCTGTCCTGGAAGTGGTTAAGCGGCGGTGTCTACCTTGGGAAGACGTCGAGATGGATGCCATCCACTCCTTACAGCTGATATTGCGAGGATCCTTGAAAGATGAGACTGTGAACGACTCCAAGACAATCGTGAATGCGTTGATGGTTGATGCAAGGATCCAAGGGGTGGATGAATTATGTAATGTTACAAACGAGATGGTTCGCCTTATAGAGACTGCTTCAGTCCCCGTTTTGGCTGTTGATGCCTCTGGTAATATAAATGGATGGAATACCAAAGCAGCTGAGTTGACAGGATTGTTTGTGCAGCAAGCTATTGGCATGCCCTTGATCAATCTTGTTGAAGATGTTTCAGTGGAAGTGGTGAAGAACATACTCTACTTGGCTTTGCAAGGCAAAGAAGAGCAGAACATCGAAATCAAGTTTAAAACATTCGGTCCTCAAGAAAATAACGGTCCTGTAATTTGGTGGTTAATGCATGTTGTAGCCGGGACACAAATGAAAAGGTTGTAG 1314 0.4574 MKNKVRMICDCSARAVKVIQDKSLAQPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTIDKNDDEIQTDQQKGRVLWGLVVCHHTSPRFVPYPLRHACEFLIQVLGIQLNKEVELATQLREKHILQTQTVLCDMLLRDAPVGIVTQSPNVMDLVKCDGAALYYKNQFWLLGLTPTEAQIRDIAGWILEHHDGSTGVSIDSLMEAGYPGSSVLGDVVSGMAAIKITSKDFLFWFRSHTAKEIKWGGAKHDHVDKDDGRKMHPRSSFKAVLEVVKRRCLPWEDVEMDAIHSLQLILRGSLKDETVNDSKTIVNALMVDARIQGVDELCNVTNEMVRLIETASVPVLAVDASGNINGWNTKAAELTGLFVQQAIGMPLINLVEDVSVEVVKNILYLALQGKEEQNIEIKFKTFGPQENNGPVIWWLMHVVAGTQMKRL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00919 437 PRINTS Phytochrome signature 36 57 IPR001294 GO:0006355|GO:0009584
Eupl05g00919 437 PRINTS Phytochrome signature 263 281 IPR001294 GO:0006355|GO:0009584
Eupl05g00919 437 PRINTS Phytochrome signature 352 367 IPR001294 GO:0006355|GO:0009584
Eupl05g00919 437 PRINTS Phytochrome signature 333 349 IPR001294 GO:0006355|GO:0009584
Eupl05g00919 437 PRINTS Phytochrome signature 145 165 IPR001294 GO:0006355|GO:0009584
Eupl05g00919 437 PRINTS Phytochrome signature 230 249 IPR001294 GO:0006355|GO:0009584
Eupl05g00919 437 NCBIfam PAS domain S-box protein 337 429 IPR000014 -
Eupl05g00919 437 Gene3D - 1 276 IPR029016 -
Eupl05g00919 437 Gene3D - 120 293 IPR043150 -
Eupl05g00919 437 SMART pas_2 332 398 IPR000014 -
Eupl05g00919 437 ProSiteProfiles PAS repeat profile. 330 400 IPR000014 -
Eupl05g00919 437 Pfam Phytochrome region 128 302 IPR013515 GO:0006355|GO:0009584
Eupl05g00919 437 SUPERFAMILY PYP-like sensor domain (PAS domain) 335 413 IPR035965 -
Eupl05g00919 437 ProSitePatterns Phytochrome chromophore attachment site signature. 36 45 IPR013516 -
Eupl05g00919 437 Gene3D PAS domain 11 39 - -
Eupl05g00919 437 SUPERFAMILY GAF domain-like 123 300 - -
Eupl05g00919 437 Pfam PAS fold 333 429 IPR013767 GO:0006355
Eupl05g00919 437 SUPERFAMILY GAF domain-like 2 112 - -
Eupl05g00919 437 CDD PAS 341 430 IPR000014 -
Eupl05g00919 437 FunFam Phytochrome 120 255 - -
Eupl05g00919 437 PANTHER OS08G0260000 PROTEIN 13 416 - -
Eupl05g00919 437 Pfam GAF domain 2 115 IPR003018 GO:0005515
Eupl05g00919 437 Gene3D PAS domain 328 432 - -
Eupl05g00919 437 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 1 105 IPR016132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00919 Eupl-Chr5 30468332 30469645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00919 1 421 Histidine Kinase Gene Family AT5G35840 67.536 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00919 - - nnu:104594238 701.819