Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00918 ATGGACAAATACACCCGTATACAAGGCGATTACATTGCAGTTGTGCGGAGCCCGTCTGCACTTATTCCTCCAATATTTATGATAGTTGTGTATGGTTGTTGCTTTGAGTGGAATAATGCCATGCAAATACTGTCCGGTTTGAAGAGGGAAGAAGCCATTGATAGGATACTTGTTGGGGAAGTGTTCAGTCTTCATAATTTTGGTTGCCGAGTCAAAGACCAAGACACATTGACCAAGCTCATGATATTACTGAATGGTGTAATTGCAGGCCAAGATGGGGATAAATTGATGTTCGGGTTCTTTGACCAGCAGGGTGATTATGTAGAAGCCTTACTCTCTACAAACAAGAGGATGGATGCAGAGGGTAGGATAACTGGGGTTCTCTGCTTTTTACATGTGGCCAACCCTGAACTTCAACATGCTTTGCAGGTGCAGAGAATGTCAGAACAGGCTGCAATGAATAGCTTAAAGGAATTGGCGTATATTCGTCGGGAAATCAGAACCCCACTTTACGGGATTATGTTTACTTGCAATCTGATGGAGGCTTCTGTTTTGACTCAAGAGCAGAAGAAACTTCTAAGGACGAGCACTCTGTGTCGGGAACAATTAACCAAGATCTCAGATGACATTGATTTAGAAAGTATCGAAGAGTGCTATTTGGAAATGAAGACCGTCGAATTCAACCTCAGGGAAGCTTTAGAGGCAGTCTTAATTCAAGGGATGCCTCTGAGCAGAGAGCGGCAGGTGCAACTCATTCATGGTTTGCCAGCAGAAGTATCCTCCATGTACTTATATGGCGATAATTTGAGGCTTCAGCAAGTCCTGTCCAACTTCTTGACGAATGTGCTCCTGTTCACCCAGGCATCCAAAGAATCATCGGTTGTGCTCAGGGTCATTCCAAGAAAGCAACATATAGGGACTGGAGTACACATTGTTCATCTTGAAATTTGGATCACCCACCCAGCTCCGGGCATTCATGACGCTTTGATTCAAGAGATGTTTCACCACAGGCAAAGCGTCTCAAGGGAAGGTCTTGCCTTATACATCAGCCAGAAGCTTGTCAAGATCATGAATGGCACTGTACGGTATCTTAGGGAAGAAGAGAAATCATCCTTCATCATTCTTGTTGATTTCCCCTTGGTTCATCATGTCGAGCCTGGGTGA 1164 0.4433 MDKYTRIQGDYIAVVRSPSALIPPIFMIVVYGCCFEWNNAMQILSGLKREEAIDRILVGEVFSLHNFGCRVKDQDTLTKLMILLNGVIAGQDGDKLMFGFFDQQGDYVEALLSTNKRMDAEGRITGVLCFLHVANPELQHALQVQRMSEQAAMNSLKELAYIRREIRTPLYGIMFTCNLMEASVLTQEQKKLLRTSTLCREQLTKISDDIDLESIEECYLEMKTVEFNLREALEAVLIQGMPLSRERQVQLIHGLPAEVSSMYLYGDNLRLQQVLSNFLTNVLLFTQASKESSVVLRVIPRKQHIGTGVHIVHLEIWITHPAPGIHDALIQEMFHHRQSVSREGLALYISQKLVKIMNGTVRYLREEEKSSFIILVDFPLVHHVEPG* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00918 387 CDD HisKA 159 210 IPR003661 GO:0000155|GO:0007165
Eupl05g00918 387 SMART HKATPase_4 266 380 IPR003594 -
Eupl05g00918 387 PANTHER TWO-COMPONENT HISTIDINE KINASE 65 372 - -
Eupl05g00918 387 ProSiteProfiles PAS repeat profile. 19 62 IPR000014 -
Eupl05g00918 387 Pfam PAS fold 20 132 IPR013767 GO:0006355
Eupl05g00918 387 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 210 375 IPR036890 -
Eupl05g00918 387 Gene3D - 219 382 IPR036890 -
Eupl05g00918 387 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 266 377 IPR003594 -
Eupl05g00918 387 ProSiteProfiles Histidine kinase domain profile. 161 382 IPR005467 -
Eupl05g00918 387 Pfam His Kinase A (phospho-acceptor) domain 159 217 IPR003661 GO:0000155|GO:0007165
Eupl05g00918 387 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Eupl05g00918 387 Gene3D - 131 216 - -
Eupl05g00918 387 FunFam Phytochrome 219 380 - -
Eupl05g00918 387 SMART HisKA_10 155 218 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00918 Eupl-Chr5 30467124 30468287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00918 2 381 Histidine Kinase Gene Family AT5G35840 54.569 9.35e-136 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00918 - - msin:131229686 580.867