Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00885 ATGTCCCGAGTAGCAAAGAAGATCTGTTTCAGAAGGGAAGAAAAAGACGAACCCTTCTTCGAATGTGCAGAACTGGTCCTGCCGTGGCTCTCTCCGTCGGACCTAGCTTCAGTCTCTTCAACCTGCAAAACCCTCCACCGTATATCAAAATCCATCAACACCAGAAGAGCCTCAGATGCTTCTAGAAACTTGGAGTTGCACCCAATCCCTTTCGTCAACACTGTCGACTCCCAACCCTATTCCTATTTCATCTACACCCCCTCTCAAATCCTAGGGTTTCCTTCTTCGTCTCCCTTATCCCAACCATGGGGATCAAACCCTAAAAGGTCCACCTTGGATTCGTCTTCCTCGACAATTTTTTATCCAAAGCCGATGAGTTCAATCTCTGCAACCGTCGAAAATACTTCTTGGTGTGTTTGTAAGAACTGCTCCGAAGAAAAAGACGGAGAACTCGAGTGCCCGTGTTCGAGACTCAAGCCAGAGTTTTCGGGTTTGGGTTCAGACTCGGAGATGATGACCGAGTGTGGACCGAGTTGTGCTTGCGGGTTGGAGTGCGAGAATCGGTCGACTCAGCGAGGAGTTTCGGTGCGACTGAGAATAATTAAAGACTGGAGGAAAGGTTGGGGCTTGTACGCGGCCCAGTTTGTGCGCCGCGGGGAATTCATCTGCGAGTACGCAGGTGAACTCTTGACGACCAAAGAAGCTAGAAGGCGTCAACAGAAGTACGATGAACTTGCATCCGGTGGCCAGTTTTCTTCTGCACTTCTTGTCGTGCGAGAGCATCTGCCGTCCGGAAAAGCATGTTTGAGGGTGAATATCGACTCAACTAGAGTTGGCAATGTTGCGCGCTTTATCAACCATTCATGTGATGGTGGTAATCTATTGACTGTCTTGGCGAGAAGCTCCGGAACGGTGCTGCCTCGCCTTTGCTTCTTTGCTTCTAAAGATATTGTAGAAGGTGAAGAACTTGTTTTCAGTTATGGAGATATTAGGCTCAGGCCAAATGGGTTGCAGTGTTTTTGTGGAAGTTCTGGTTGCTTGGGAGTGCTGCCTTCAGAGCAAACTTGA 1068 0.4878 MSRVAKKICFRREEKDEPFFECAELVLPWLSPSDLASVSSTCKTLHRISKSINTRRASDASRNLELHPIPFVNTVDSQPYSYFIYTPSQILGFPSSSPLSQPWGSNPKRSTLDSSSSTIFYPKPMSSISATVENTSWCVCKNCSEEKDGELECPCSRLKPEFSGLGSDSEMMTECGPSCACGLECENRSTQRGVSVRLRIIKDWRKGWGLYAAQFVRRGEFICEYAGELLTTKEARRRQQKYDELASGGQFSSALLVVREHLPSGKACLRVNIDSTRVGNVARFINHSCDGGNLLTVLARSSGTVLPRLCFFASKDIVEGEELVFSYGDIRLRPNGLQCFCGSSGCLGVLPSEQT* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00885 355 Pfam SET domain 207 328 IPR001214 GO:0005515
Eupl05g00885 355 Gene3D SET domain 37 332 IPR046341 -
Eupl05g00885 355 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 56 350 - -
Eupl05g00885 355 SMART set_7 196 334 IPR001214 GO:0005515
Eupl05g00885 355 ProSiteProfiles SET domain profile. 194 328 IPR001214 GO:0005515
Eupl05g00885 355 CDD F-box_SF 21 50 - -
Eupl05g00885 355 ProSiteProfiles Post-SET domain profile. 335 351 IPR003616 -
Eupl05g00885 355 SUPERFAMILY SET domain 56 341 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00885 Eupl-Chr5 29910054 29916221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00885 174 350 C2H2 Transcription Factor Family AT2G23740 35.979 8.25e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl05g00885 SET 5.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00885 K11433 - nnu:104588683 507.294