Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00884 ATGGACGAGCAACAAGGCGACGATACATCCGATAAGCCATCGCGTAATGGTCGGCGTGGTGGCACAGGGAAGCCTGTGGCACTACCAGTGGTGTCGGGTACGGCACCATGTGGAGCGTGTAAGTTCTTGAGGAGGAAATGCGTAAGTGGCTGTATTTTTGCACCGTACTTCAGGTCGGACCAGGGTGCAGCGCGGTTTGCAGCGGTGCACAAGGTGTTCGGTGCGAGTAATGTGTCCAAGCTTTTGTTGCACGTACCTGTGAACCAACGGCACGATGCAGTCGTTACCGTATCATATGAGGCTCAGGCTAGGCTGTCCGATCCGGTTTATGGTTGCGTGTCCACCATACTTGCTTTGCAACAACAGGTGGCGTCGTTGCAAGCCGAGCTCTCGTTTGTGCAGACACAGCTGATAAACAGTAGGTTGGCAGTTGCAAATGTCCTCCAGAGCTCGCAGCAACAGCAGCAAATTGCGGTGCTGCAGCCCGCATACTCAAACAACTCCTCCGTTTCGAACAGCCTTGTCAACCTGAGCAGCTTCCCCTCAAACTTCGACTTCACAGCCGAGACCGCCCCGTCTTCCCTAAGCTTCAAGCCACTTCAACTCTCCCAGCCACCACAGGATGAAGACGGAGATGAGGAAGAGAGTCAGAATCCGGGCATTTTCGCCAATCAAATATTTCACAGGAAATGA 693 0.5354 MDEQQGDDTSDKPSRNGRRGGTGKPVALPVVSGTAPCGACKFLRRKCVSGCIFAPYFRSDQGAARFAAVHKVFGASNVSKLLLHVPVNQRHDAVVTVSYEAQARLSDPVYGCVSTILALQQQVASLQAELSFVQTQLINSRLAVANVLQSSQQQQQIAVLQPAYSNNSSVSNSLVNLSSFPSNFDFTAETAPSSLSFKPLQLSQPPQDEDGDEEESQNPGIFANQIFHRK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00884 230 MobiDBLite consensus disorder prediction 197 230 - -
Eupl05g00884 230 MobiDBLite consensus disorder prediction 1 26 - -
Eupl05g00884 230 Coils Coil 116 136 - -
Eupl05g00884 230 PANTHER LOB DOMAIN CONTAINING PROTEIN 34 202 - -
Eupl05g00884 230 Pfam Lateral organ boundaries (LOB) domain 36 134 IPR004883 -
Eupl05g00884 230 ProSiteProfiles LOB domain profile. 35 137 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00884 Eupl-Chr5 29909938 29918718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00884 2 230 AS2 family AT3G03760 54.779 3.94e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl05g00884 LOB 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00884 - - psom:113313448 305.449