Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00871 ATGGCCTGGTGTAAGCACTGTGCGAAAAATTGTGCGACAGCGCGTGCAGATGAAGGCTTCTTATGTTGTACTGGCTGCGGGAGGGTTATTGATCAGGACATGTTCTCTACTGAAGTTACCTTTTTTAAATCTGCTGGAGGGCAGAGCCAACTGTCTGGTAATTTTGTAAAGAGTGTTGAAAGCGACTACTCTGAGTCACATGAAAGGACTTTGATGAAGGGAAGGGACGAAATCAGTGATATGGTAGTAAGTCTATGCGTGGGTGGTGGAAATTCTATAATTGACCAAGCGTGTGCTTTTTATAGAATAGCGGTTGAACGAAATTTCACTAGGGGGCGTAGAACATCACAGGTTGCTGCTGCTTGCCTGTACATTGCATGCCGGGAAAATAAAAAGGCATACCTTCTCATTGATTTCTCAGACTACTTGCAGATAAATGTTTATGTGCTAGGTGCTGTATTTTTGCAGCTTTGCAAATTGCTAAGGCTTGAAGAACATCCCATCGTTCAAAAACCTGTTGATCCTAGCCTTTTTATTCATCGATTCACAGAGCGTTTACTGGGAGGCAAGAATGTTGAGGTTTCTAGGACTGCATTGCGCATTATAGCTAGCATGAAGCGAGATTGGATGCAGACAGGGAGAAAACCTAGTGGATTATGTGGTGCAGCATTGTACATATCTGCACTTTCTTATGGGCTCAAATATTCCAAGTCAGACGTTGTCAGTGTTGTGCATATCTGTGAAGCAACATTGACAAAACGACTGATTGAATTCGAGAATACAGAGTCAGGGAGTTTAACGATCGAGGAGTTTAATACGAAAGCGGATGAGCTTGAAAGAGATGCTGATTCAAGACAACAACCAAATGTGGGGAGTAAAATATCTGGGACAACGGAACTACTTTGTGAACATAAGGGTACAGAAAAACCTCATTTTGCCCATGGACTCTGTAAAAGTTGTTATGATGATTTCATCATACTTTCTGGAGGACTTCAAGGAGGATCAGAACCTCCAGCTTTTCAGCGTGCAGAAAGGGAGAGAATGGCCAAAGTGTCTGCTGAGGATAAGGCCAAAGAATCAAGTCCCATTACTACGCTTTGCCAGAAGGAAAACAACCACAGACATTTTGAGAAAGAAGTGGAGCTTTCCTCTAAATCCACCCAAGAAGTGATTGAAAATGAAAGATCAGATTCTAGAGAGTCTGAAAGCATTGGTGCTGCTACTGGACATCAGCCAGTTGACGAGGGTACTTCCGGTCAATCACATAGATATGAGAATATGGATAATGTGGCTGGTGATGAATCAGAAAGCCTTTCTGATATTGATGATGTTGAGGTCAATGGGTACCTTCACAACGAGGAGGAGAAGCGTTATAAGAAGATTATCTGGGAAGAAATGAACAGGGAGTATCTTGAGGAACAAGCAGCTAAAGAAGCAGCTGCTGCAGCAGCTAAGGAAGCTTATGAGGCCAACTTTCAGAATTGTTCAGAGGACTTGCTTGCTGCACATCAACTTGCTGCAGCAGCTTCAGCGGCTGTGGCCAAGTCAAGAAAGGAAAGGCAACAGAAACGAGCTGCAGAAGCCAAGAATGCAGCTCCTGCTCAAACTGCTGCAGAAGCCACCCGACAAATGCTTGCTAAGAAGAGACTCAGTTCAAAAATTAACTATGATGTATTGGAGAAACTCTTTGACGACTCTACGGCTCCCGAGAACAAGAAAAAACGCATTGAATCGGATTCTAGCGATGACGCCAACAGGCACCACATCAACAAGGTATTGGGCAAGCAAGAACTTGAATCGGACCACAGGGACAATGACGATGACATACGACAGGAGGATGAATATGAAGAAGAGGGCGAAGCTGGAGGAACCTATGGTGATGGAACCTATGGTGATGATTCATATTATGGGAATGAAGCAGAGGAATATGGTAATGATGAGGACTATGGTTACGAGTTTTGA 1962 0.4363 MAWCKHCAKNCATARADEGFLCCTGCGRVIDQDMFSTEVTFFKSAGGQSQLSGNFVKSVESDYSESHERTLMKGRDEISDMVVSLCVGGGNSIIDQACAFYRIAVERNFTRGRRTSQVAAACLYIACRENKKAYLLIDFSDYLQINVYVLGAVFLQLCKLLRLEEHPIVQKPVDPSLFIHRFTERLLGGKNVEVSRTALRIIASMKRDWMQTGRKPSGLCGAALYISALSYGLKYSKSDVVSVVHICEATLTKRLIEFENTESGSLTIEEFNTKADELERDADSRQQPNVGSKISGTTELLCEHKGTEKPHFAHGLCKSCYDDFIILSGGLQGGSEPPAFQRAERERMAKVSAEDKAKESSPITTLCQKENNHRHFEKEVELSSKSTQEVIENERSDSRESESIGAATGHQPVDEGTSGQSHRYENMDNVAGDESESLSDIDDVEVNGYLHNEEEKRYKKIIWEEMNREYLEEQAAKEAAAAAAKEAYEANFQNCSEDLLAAHQLAAAASAAVAKSRKERQQKRAAEAKNAAPAQTAAEATRQMLAKKRLSSKINYDVLEKLFDDSTAPENKKKRIESDSSDDANRHHINKVLGKQELESDHRDNDDDIRQEDEYEEEGEAGGTYGDGTYGDDSYYGNEAEEYGNDEDYGYEF* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00871 653 CDD CYCLIN_TFIIIB90_rpt2 171 261 - -
Eupl05g00871 653 Gene3D Single helix bin 431 481 - -
Eupl05g00871 653 MobiDBLite consensus disorder prediction 565 609 - -
Eupl05g00871 653 PRINTS Transcription initiation factor IIB signature 120 139 IPR000812 GO:0006352|GO:0070897
Eupl05g00871 653 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Eupl05g00871 653 PRINTS Transcription initiation factor IIB signature 214 230 IPR000812 GO:0006352|GO:0070897
Eupl05g00871 653 Coils Coil 511 531 - -
Eupl05g00871 653 MobiDBLite consensus disorder prediction 340 357 - -
Eupl05g00871 653 MobiDBLite consensus disorder prediction 565 653 - -
Eupl05g00871 653 Pfam Brf1-like TBP-binding domain 439 564 IPR011665 -
Eupl05g00871 653 CDD CYCLIN_TFIIIB90_rpt1 70 161 - -
Eupl05g00871 653 FunFam Transcription factor IIIB 90 kDa subunit 63 167 - -
Eupl05g00871 653 Gene3D - 63 166 - -
Eupl05g00871 653 MobiDBLite consensus disorder prediction 516 540 - -
Eupl05g00871 653 MobiDBLite consensus disorder prediction 639 653 - -
Eupl05g00871 653 SUPERFAMILY Cyclin-like 74 164 IPR036915 -
Eupl05g00871 653 Gene3D - 174 263 - -
Eupl05g00871 653 FunFam Cyclin/Brf1-like TBP-binding protein 431 481 - -
Eupl05g00871 653 FunFam Transcription factor IIIB subunit 174 263 - -
Eupl05g00871 653 Pfam Transcription factor TFIIB repeat 68 158 IPR013150 GO:0017025
Eupl05g00871 653 Pfam Transcription factor TFIIB repeat 170 260 IPR013150 GO:0017025
Eupl05g00871 653 SUPERFAMILY Cyclin-like 173 265 IPR036915 -
Eupl05g00871 653 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 554 IPR000812 GO:0006352|GO:0070897
Eupl05g00871 653 MobiDBLite consensus disorder prediction 336 425 - -
Eupl05g00871 653 SMART cyclin_7 76 159 IPR013763 -
Eupl05g00871 653 SMART cyclin_7 177 260 IPR013763 -
Eupl05g00871 653 MobiDBLite consensus disorder prediction 370 401 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00871 1 548 Inorganic Solute Cotransporters AT2G01280 42.495 2.63e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00871 K15196 - nnu:104593430 849.351