Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00858 ATGGAAAGAGGGACTGAACAGGATTACGACGAATTTGAGATGCTTCTTGGAGAGATACCGAATGTTACTTCTGGAAATCCACATCCTGAGGAATCCGTTCCCATTAATTCCTCACCAGCTTTGAAGGGGCTTCCTCGGGAAGAAGAGAACTCGAACTCCTCTCCTTCTGCCACTTTCACTAACTTCTACCATGCTTCCCAGGCAGGAAGCCCCAGCAGCAATGCAGCCTTCTATGGTGGCTTGTCCTTTGATAGACCCAGCGCCGCTTGTGTAAATTCCTCTCATGGACTATTTGATCAGAAACATCAAACCAATGGAAATTTAGAGGGAGGGAGGAATGCTGTGAACAACAGTCATCAATCACCCATCAAGAATGTTGATCGGGAGGACTCAAATCTCCCTGATGATCAATCCTTGACATCTGCATTCACACAATTGAGCTTTAAGGACGGAGTGGCAATGGGAGCAACGAGTGCCCCGCTGGTTAATTATAAAACCTTACCAAATTGCACATTTTTATTGGAAGAGCAGTACCCTAACCACTTAAAGAAATCTCTTTCCAGTTTAGATTCAGGGAGCATGGTTCCCTCTCCTCCAACAGCCAATACTCTAAATGGCAGGACTTTGATGAGCCCCACCTCAAACGGTCTGGAAAAATTCAATGTGGATTTGAATGGTCAAGAAAGTGCGAAGTTTCTCAAACTTGGTGTTCAAGAACTACATAAGCAGAAACCTGGGTCTTGCCAGCCACTTGAGAGCTTACCAATTGACTTGGGAGAGCAGCAGCAGAGCCTCCCTGTCTACTCTGGAGCCATGCCTTTAGCTCCTGTTATGCATGGTTTCCAGGTTCTCTCGAGCATTCCTGTTCCTGGAGTGGAGTTCTCAGTTACGCCGTATCAGCAGCAGTACTTCTTGGACACACAATCTCCTCTTCCGTACATGCAGTCACAGCAACTAAGCCAGTCTCAGATTGCATGGCGACATATGGAAGAAGAGAGGTATAGGATGCATCAGCAATACATGTACTTGCAACAGCTCCAGAATCAGGGACCTGAAGCCCACCATCCAGTTCAGGCAAATGCAAATGCGACAATTGGGCCTATAACTAGGAATGCAAGGCAGCCATATTTAGATATGCCCATCTCCCACCAGCTAGAACAGGCCAATAGAGATCCCTTTTGGAATAGTGCTTCAATTCAGAGGGGATTGAGCCCATCCAAACTCACACTGATGAGCAGTGACCTGTGTCATTACTATGCTCAGGGGTTCTGTGGGAGGGGAGAAAGCTGCCCGTTTGCACATGGACAGAAGCAAACATCTGCAAGCAGTTTTGGTCGTTCTTCTCCAACCATTTCTGACAAAGATTTTGAAGCAGTTCAAGTTTTGGACAAAGTGGGGAAACATAATTTTCCTGAAAAGATTCTAACGAGATCACATGGGTTAAACTCGTTAAGAGCTATCAATCCTGGCTCTGGCTCTATCGGAGGGCATGAATCGCTCAAACATGTCAACTCCAATGGAAGGGTGCTTTCAAATGGCCATATTCACCACCACCCGTCCATTCTAAATGCAGGATCCTTCCAGCTAGATGGTCGGACTTCACCTGCTTCTTCACCTGATAATGTGGATCTTAGAATCAATAATCTGAGGTCACAGCCGCAGAAATATAATTCGGTGGACGAAGTCATGGGCAGAATCTATCTCATGGCAAAGGATCAGCATGGCTGCCGCTTCTTGCAAAGGAAATTTACAGAAGGAAGTGCTGAAGATGTTGAGAAGATCTTTATCGAGATCGTTGGTCACATTGTTGAGCTCATGACGGATCCTTTTGGGAATTACCTTGTGCAGAAGCTGCTTGAAGTGTGCCACGAGGATCAGAGAATGGAGATACTTCACGCGATTACTATAAAACCTGGGGACCTTGTCAGAATCTCGTGTGACATGCACGGGACCCGCGCTGTGCAGAAAGTTATAGAAACTCTTAAGACTCCGGAGCAACTTTCCATGGTTGTTTCCTCACTGAAGCCTGGTATAGTGATTTTGATAAAAGACATGAATGGTAATCATGTTGCGCAACGCTGCTTGCAATACTTGATGCCTGAATATAGTAAGTTCCTTTTTGAAGCTGCAATCACTCATTGCGTCGAGCTTGCAACAGATCGTCATGGCTGCTGCGTGCTTCAAAAGTGCCTCAGCCATTCCAATGGCGAACAGAGACGCCGCTTAATATGCGAGATCACTTCAAATGCTCTTATCCTCTCCCAAGATCCATTTGGGAACTATGTTGTGCAATACATCTTTGAACTTCGGGTTCCATTGGCAACAATCGATGTGATCAACCAACTAGAGGGCAACTTTGGATACCTCTCTATGCAGAAATATAGTAGCAATGTGGTCGAGAAATGCCTGAAATACGCAGGAGAAGAGCGCCAACCTCGGATAATTCAGGAACTGATAACTGATTCTCGATTAGATCAGATCTTGCAGGACCCTTATGGAAATTATGTTATTCAAGCAGCACTGAATCATTCCAAGGGGACCCTTCATGCTACATTGGTGGAGGCTATCAGGCCCCATGTTCCAGCACTCCGGACCAGCCCATACGGGAAGAAAGTCCTCTCAAGCAACAGTCTGAAGAAGCTTTAG 2646 0.4599 MERGTEQDYDEFEMLLGEIPNVTSGNPHPEESVPINSSPALKGLPREEENSNSSPSATFTNFYHASQAGSPSSNAAFYGGLSFDRPSAACVNSSHGLFDQKHQTNGNLEGGRNAVNNSHQSPIKNVDREDSNLPDDQSLTSAFTQLSFKDGVAMGATSAPLVNYKTLPNCTFLLEEQYPNHLKKSLSSLDSGSMVPSPPTANTLNGRTLMSPTSNGLEKFNVDLNGQESAKFLKLGVQELHKQKPGSCQPLESLPIDLGEQQQSLPVYSGAMPLAPVMHGFQVLSSIPVPGVEFSVTPYQQQYFLDTQSPLPYMQSQQLSQSQIAWRHMEEERYRMHQQYMYLQQLQNQGPEAHHPVQANANATIGPITRNARQPYLDMPISHQLEQANRDPFWNSASIQRGLSPSKLTLMSSDLCHYYAQGFCGRGESCPFAHGQKQTSASSFGRSSPTISDKDFEAVQVLDKVGKHNFPEKILTRSHGLNSLRAINPGSGSIGGHESLKHVNSNGRVLSNGHIHHHPSILNAGSFQLDGRTSPASSPDNVDLRINNLRSQPQKYNSVDEVMGRIYLMAKDQHGCRFLQRKFTEGSAEDVEKIFIEIVGHIVELMTDPFGNYLVQKLLEVCHEDQRMEILHAITIKPGDLVRISCDMHGTRAVQKVIETLKTPEQLSMVVSSLKPGIVILIKDMNGNHVAQRCLQYLMPEYSKFLFEAAITHCVELATDRHGCCVLQKCLSHSNGEQRRRLICEITSNALILSQDPFGNYVVQYIFELRVPLATIDVINQLEGNFGYLSMQKYSSNVVEKCLKYAGEERQPRIIQELITDSRLDQILQDPYGNYVIQAALNHSKGTLHATLVEAIRPHVPALRTSPYGKKVLSSNSLKKL* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00858 881 MobiDBLite consensus disorder prediction 101 122 - -
Eupl05g00858 881 MobiDBLite consensus disorder prediction 101 137 - -
Eupl05g00858 881 Gene3D - 409 467 - -
Eupl05g00858 881 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 278 874 - -
Eupl05g00858 881 ProSiteProfiles Zinc finger C3H1-type profile. 410 437 IPR000571 GO:0046872
Eupl05g00858 881 Gene3D - 545 880 IPR011989 -
Eupl05g00858 881 SUPERFAMILY ARM repeat 553 874 IPR016024 -
Eupl05g00858 881 FunFam Pumilio homolog 9 548 881 - -
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 786 819 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 713 747 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 829 856 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 565 598 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 642 672 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 678 708 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 601 635 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Pumilio-family RNA binding repeat 751 768 IPR001313 GO:0003723
Eupl05g00858 881 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 436 IPR000571 GO:0046872
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 745 780 IPR001313 GO:0003723
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 817 854 IPR001313 GO:0003723
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 597 632 IPR001313 GO:0003723
Eupl05g00858 881 SUPERFAMILY CCCH zinc finger 413 435 IPR036855 GO:0046872
Eupl05g00858 881 MobiDBLite consensus disorder prediction 1 58 - -
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 561 596 IPR001313 GO:0003723
Eupl05g00858 881 SMART c3hfinal6 411 436 IPR000571 GO:0046872
Eupl05g00858 881 CDD Pumilio 564 874 IPR033712 GO:0003723
Eupl05g00858 881 SMART pum_5 709 744 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 673 708 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 781 816 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 745 780 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 597 632 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 636 672 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 561 596 IPR001313 GO:0003723
Eupl05g00858 881 SMART pum_5 819 854 IPR001313 GO:0003723
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 635 672 IPR001313 GO:0003723
Eupl05g00858 881 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 538 880 IPR033133 GO:0003723
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 781 816 IPR001313 GO:0003723
Eupl05g00858 881 ProSiteProfiles Pumilio RNA-binding repeat profile. 708 744 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00858 Eupl-Chr5 29477246 29492343 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl05g00858 PUF 1.5e-10 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00858 - - tss:122642763 1278.46