Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00844 ATGGCAGCGCAGTTTAGCGGTGGGGGGAGTGGTATGGTCGTGGTGATTTTGCTCTTATTTCTGATCTTGACCCCGTTATCGTGCGTCGGTCGGACAGGCATTTCCAAACAGAAGCTGGAAGTTCAGAAGCACTTGAAGCGTTTAAACAAACCCGCTGTGAAGACCATCAAGGACGACGACGACGATGATGATGATGATTTTACTTGTGAAATCAAGAAAAAGAGTAGATGCAGCATCGTCTATGGTGATCGTCTATGGTGGCTCACGGCAGCAGCTACAAGAATGGCGGCGGTGGTTCAGGTGGTCGGAGATGAAGATGATTGCAATAGTGGGAAGGTTCATGGATCTCTTGCCAGAGCAGGGAAGGTTAGAGGGCAAACACCAAAGGTGGCGAAACAAGACAAGAAGAAGAAGCCCAGAGGAAGGGCTCACAAGAGGATGCAGTACAACAGGCGCTTTGTCACTGCTGTTGTTGGGTTTGGGAAGAAAAGAGGACCCAATTCGTCAGAGAAGTAG 516 0.4942 MAAQFSGGGSGMVVVILLLFLILTPLSCVGRTGISKQKLEVQKHLKRLNKPAVKTIKDDDDDDDDDFTCEIKKKSRCSIVYGDRLWWLTAAATRMAAVVQVVGDEDDCNSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00844 171 MobiDBLite consensus disorder prediction 131 148 - -
Eupl05g00844 171 MobiDBLite consensus disorder prediction 123 148 - -
Eupl05g00844 171 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 99 171 - -
Eupl05g00844 171 Pfam Ribosomal protein S30 112 168 IPR006846 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00844 Eupl-Chr5 29272980 29283935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00844 111 171 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.721 4.71e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00844 K02983 - dcr:108213078 116.701