Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00827 ATGAGAAATCCATCGGTGGGTGCAAGTAGTAGTAAGGTGGGACTGAAGAGAGGGCCGTGGACGGCGGAGGAAGATGAGCTTTTGGTGAATTATATAAGGAGAGAGGGGGAGGGACGGTGGCGGACGCTGCCCAAGCGGGCGGGGCTGCTTCGCTGCGGTAAGAGTTGTCGCCTCCGCTGGATGAATTATCTCCGACCCTCCGTTAAGAGGGGCCAGATCGCTCCCGATGAAGAAGATCTCATCCTTCGCCTTCACCGTCTACTCGGTAACAGGTGGTCTTTGATTGCTGGGAGGATCCCGGGACGTACGGATAACGAGATCAAGAACTATTGGAATACCCACCTCAGCAAGAAATTGATCAGCCAAGGAATAGATCCCAGAACCCACAAACCATTAAACCCTAACCCTAATTCCTCGGCAGGCGACCAAGCTCCTGCACCAAAATCGAACCCTAAACCTAGTTCTTCTTGTTTAGAAGAAATGGGTTGTGGTGGTAGCGATGATGTTGTCAAAAAGGATCATAACAAGTATCTCAAAGGGACTGCTAACCTGGATCAGGATCACAATTGGCAGAATTCTGATGGGTTGATGATGGGTTTGGAAAGCAGCCATGGGAACAGCAACGAAGATGATGATATCGATTACTGCACCGACGACATATTTTCTTCGTTTTTGAATTCTCTGATTAACGAGGATGTGTTTGTGAATCAACAGCAGCAGCAACAGCTCAATGTGATTGCACCTCCAGATCCTTTAGTCTCAGCATCTGCACAGACTTTCGGCTACGGCGCCATGTGGGAATCTGCACTACTCTCGTCTTCCAGAGCTGCTTTCAAGGATGAAGAACATAAGCCCGATCATGTCAATAAGCGTGTCTGA 879 0.4915 MRNPSVGASSSKVGLKRGPWTAEEDELLVNYIRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPNPNSSAGDQAPAPKSNPKPSSSCLEEMGCGGSDDVVKKDHNKYLKGTANLDQDHNWQNSDGLMMGLESSHGNSNEDDDIDYCTDDIFSSFLNSLINEDVFVNQQQQQQLNVIAPPDPLVSASAQTFGYGAMWESALLSSSRAAFKDEEHKPDHVNKRV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00827 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Eupl05g00827 292 MobiDBLite consensus disorder prediction 131 156 - -
Eupl05g00827 292 CDD SANT 75 115 IPR001005 -
Eupl05g00827 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 201 - -
Eupl05g00827 292 CDD SANT 19 64 IPR001005 -
Eupl05g00827 292 FunFam transcription repressor MYB5-like 74 140 - -
Eupl05g00827 292 SMART sant 16 66 IPR001005 -
Eupl05g00827 292 SMART sant 69 117 IPR001005 -
Eupl05g00827 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Eupl05g00827 292 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Eupl05g00827 292 Gene3D - 74 143 - -
Eupl05g00827 292 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Eupl05g00827 292 Pfam Myb-like DNA-binding domain 74 115 IPR001005 -
Eupl05g00827 292 Gene3D - 14 70 - -
Eupl05g00827 292 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Eupl05g00827 292 MobiDBLite consensus disorder prediction 124 163 - -
Eupl05g00827 292 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Eupl05g00827 292 FunFam Myb transcription factor 14 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00827 Eupl-Chr5 28957338 28963997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00827 11 262 MYB Transcription Factor Family AT3G13540 54.118 1.72e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g00827 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00827 K09422 - nnu:104597655 374.015