Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00808 ATGAGGGGTAGAAGTTACAGTCCCTCACCACCAAGGGGCTATGGAAGAAGAGGTCGGAGTCCTAGCCCTAGAGGTCGCCAAGGAGGCCGTGGTAGAGATCTTCCTACTAGTCTTTTAGTTCGCAACCTTCGCCAAGATTGTAGGCCAGAAGACCTCCGTAGGCCGTTTGGACAATTTGGTCCTCTTAAGGACGTATACTTGCCACGAGATTACCACACTAAGGAGCTACGTGGCTTCGGTTTTGTCCAATATGTAGACCCTGCTGATGCTGCAGAAGCAAAATATCAAATGGATGGGCAAATTCTTCATGGTCGGGAGCTGACTGTTGTATTTGCGGAGGAGAGCAGAAAGAGACCTGCTGACATGAGGGCAAGAGAACGAGTGAGGGATCGAGTATCTGACCGCACGCGATCTCCCCCTCGATATTCCCGCTCACGTTATTCCCGATCGCCACGTTATGCAAGATCTGTGTCTCGCAGCCGTAGTTACTATTCCACTTCCCCTCGGCGAAGGCATTACTCGAGGTCAGTTTCACCTCAAGACAGAAAGTACCGTCTAGAGGAATCGCACCCCCCTTCTCCCTATAATGGTTCAAGGAGGAGCAGGAGCCGCACCCCAGAAGACTATACAAGAGCACACAGAGAAAGGTCCTTGTCCCTAAGCCAGTAG 669 0.5157 MRGRSYSPSPPRGYGRRGRSPSPRGRQGGRGRDLPTSLLVRNLRQDCRPEDLRRPFGQFGPLKDVYLPRDYHTKELRGFGFVQYVDPADAAEAKYQMDGQILHGRELTVVFAEESRKRPADMRARERVRDRVSDRTRSPPRYSRSRYSRSPRYARSVSRSRSYYSTSPRRRHYSRSVSPQDRKYRLEESHPPSPYNGSRRSRSRTPEDYTRAHRERSLSLSQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00808 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Eupl05g00808 222 MobiDBLite consensus disorder prediction 1 38 - -
Eupl05g00808 222 MobiDBLite consensus disorder prediction 174 189 - -
Eupl05g00808 222 SUPERFAMILY RNA-binding domain, RBD 36 138 IPR035979 GO:0003676
Eupl05g00808 222 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 35 211 - -
Eupl05g00808 222 MobiDBLite consensus disorder prediction 143 173 - -
Eupl05g00808 222 MobiDBLite consensus disorder prediction 114 141 - -
Eupl05g00808 222 MobiDBLite consensus disorder prediction 201 215 - -
Eupl05g00808 222 MobiDBLite consensus disorder prediction 114 222 - -
Eupl05g00808 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Eupl05g00808 222 SMART rrm1_1 37 110 IPR000504 GO:0003723
Eupl05g00808 222 Gene3D - 11 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00808 Eupl-Chr5 28616431 28632831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00808 36 145 Eukaryotic Initiation Factors Gene Family AT4G34110 27.928 2.14e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00808 K12900 - ming:122061968 234.958