Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00800 ATGCCGACTTCGTGGGCGGATTCTGTGGCTAGCGTTGCAGCTGAGAATGTACCTGCTGGTTCTTCTGCTAATAATGGTGTTGGTAGCACTTCGCTACCTGCCCGATCTTCTTACGTTCCACCACATCTTCGGAACCGGCCACCTTCGTCGGATCCTCCTGCTCCGGCTTACACTGGTCCTTCATCTGGTAACGATAGATCTGGTTCCGGCCCTCCCATTGGTGGGACCCGGTGGGGTGGTCCTAGGGCAGATTTAGTGCAACCCGGGTCTGGTGGTGGTGGTGCGCGCATTGGAGGTGCTTGGAACAGCAGAAGTGGTGGATGGGATCGTGGAAAAGAGCGGGAGGTGAACCCATTTCGAGATGATGAAGAAGCAGAGCCTGATTTATCTGAGCAGAGTACTGGCATTAATTTTGATGCTTATGAAGACATTCCAGTAGAGACAAGTGGTGATAATGTGCCACCTCCAGTGAATACATTTGCAGAAATCGACTTAGGGGAAGCACTCAATCAGAATATACGTAGGTGTAAGTATGTCAAGCCAACACCCGTGCAGCGTCATGCCATCCCTATATCTCTTGGAGGACGGGACTTGATGGCTTGTGCTCAAACTGGGTCTGGCAAGACAGCCGCTTTCTGTTTTCCAATTATCAGTGGAATTATGAATGGGCAGTTTGCACAGAGACCGCGTGGTGCACGGACTGTGTATCCACTTGCTCTTATTCTATCTCCTACCCGGGAGCTATCGTGCCAGATACACGGGGAGGCTAAAAAATTTTCGTATCAGACTGGTGTCAAGGTGGTTGTTGCGTACGGAGGAGCACCAATTAATCAGCAGTTGAGGGAGCTGGAGAGAGGTGTCGATATTCTTGTGGCAACTCCTGGTCGATTGGTGGATTTGTTGGAGAGGGCTAAAGTCTCATTACAAATGATTAGGTATTTGGCTCTAGATGAAGCAGATCGAATGTTGGATATGGGTTTTGAGCCACAAATTAGAAAGATTGTTGAACAGACAGACATGCCTCCGCGAGGTGCAAGGCAGACAATGTTGTTCAGTGCTACCTTTCCGAAAGAGATACAGAGATTGGCCTCTGATTTTCTTTCCAAGTACATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATTTGATTGTCCAAAGAGTTGAATTTGTTAACGAGTCAGATAAGAGAAGCCACCTCATGGACCTTCTTCATGCCCAAAGGCAAAATGGATCTCATGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACGAAGAAAGGAGCTGATTCATTGGAGAACTGGTTGTATATAAATGGTTTTCCTGCAACTACTATTCATGGCGATAGAACACAGCAGGAAAGGGAACATGCATTGAGATCGTTTAAAAGTGGGTTGTGCCCAATTTTGGTGGCAACGGATGTGGCGGCACGTGGCCTCGATATCCCCCATGTTGCACATGTGGTCAACTTTGACCTCCCCAATGACATCGATGACTATGTCCATCGGATAGGGCGAACAGGGCGAGCAGGTAAGTCCGGTTTGGCAACTGCCTTCTTCAACGAGAACAATTCCTCGTTGGCAAGGTCGTTGGCAGAACTGATGCAGGAATCTAACCAAGAGGTTCCTGCTTGGCTCACCCGTTATGCTGCCCGGTCATCTTATGGAGGAGGTGGGAGGAACCGTCGTTCTGGAGGCCGCTTCGGTGGCCGTGACTTCCGGAGGGATGCTCCATTCAATAGAGGTGGGGGCGGTGCAGACTACTATGGTGGAAGCAACAGTAGCAGTGGATACGGGGCTTCCCCTGGCGGGTATGGTGGTGGCTATGGTGCAGGTGTTACCAGTGCGTGGGATTAG 1860 0.4968 MPTSWADSVASVAAENVPAGSSANNGVGSTSLPARSSYVPPHLRNRPPSSDPPAPAYTGPSSGNDRSGSGPPIGGTRWGGPRADLVQPGSGGGGARIGGAWNSRSGGWDRGKEREVNPFRDDEEAEPDLSEQSTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMNGQFAQRPRGARTVYPLALILSPTRELSCQIHGEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQTDMPPRGARQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEFVNESDKRSHLMDLLHAQRQNGSHGKQALTLVFVETKKGADSLENWLYINGFPATTIHGDRTQQEREHALRSFKSGLCPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSLARSLAELMQESNQEVPAWLTRYAARSSYGGGGRNRRSGGRFGGRDFRRDAPFNRGGGGADYYGGSNSSSGYGASPGGYGGGYGAGVTSAWD* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00800 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 528 IPR027417 -
Eupl05g00800 619 Pfam DEAD/DEAH box helicase 182 362 IPR011545 GO:0003676|GO:0005524
Eupl05g00800 619 Gene3D - 113 375 IPR027417 -
Eupl05g00800 619 Gene3D - 376 556 IPR027417 -
Eupl05g00800 619 MobiDBLite consensus disorder prediction 555 578 - -
Eupl05g00800 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 373 IPR014001 -
Eupl05g00800 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 551 - -
Eupl05g00800 619 MobiDBLite consensus disorder prediction 107 123 - -
Eupl05g00800 619 MobiDBLite consensus disorder prediction 1 36 - -
Eupl05g00800 619 SMART helicmild6 431 512 IPR001650 -
Eupl05g00800 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 551 IPR001650 -
Eupl05g00800 619 Pfam Helicase conserved C-terminal domain 397 512 IPR001650 -
Eupl05g00800 619 SMART ultradead3 177 388 IPR014001 -
Eupl05g00800 619 CDD SF2_C_DEAD 385 521 - -
Eupl05g00800 619 FunFam ATP-dependent RNA helicase RhlB 376 555 - -
Eupl05g00800 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Eupl05g00800 619 FunFam Probable ATP-dependent RNA helicase DDX4 121 375 - -
Eupl05g00800 619 CDD DEADc_DDX3_DDX4 159 379 IPR044763 GO:0003724|GO:0005524
Eupl05g00800 619 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00800 Eupl-Chr5 28477722 28485652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00800 156 544 Eukaryotic Initiation Factors Gene Family AT3G19760 31.282 1.63e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00800 K11594 - nnu:104597630 968.378